De novo Genome Assembly from Next-Generation Sequencing (NGS) Reads

2016 ◽  
pp. 144-155
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Next Generation ◽  
De Novo Genome Assembly ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing

scholarly journals Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly

PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e69503 ◽  
Author(s):  
Tsunglin Liu ◽  
Cheng-Hung Tsai ◽  
Wen-Bin Lee ◽  
Jung-Hsien Chiang
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Next Generation ◽  
De Novo Genome Assembly ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing

scholarly journals A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

PLoS ONE ◽  
2011 ◽  
Vol 6 (3) ◽  
pp. e17915 ◽  
Author(s):  
Wenyu Zhang ◽  
Jiajia Chen ◽  
Yang Yang ◽  
Yifei Tang ◽  
Jing Shang ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Software Tools ◽  
Next Generation ◽  
De Novo Genome Assembly ◽  
Sequencing Technologies ◽  
Generation Sequencing ◽  
Assembly Software

scholarly journals Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

BMC Genomics ◽  
2015 ◽  
Vol 16 (Suppl 12) ◽  
pp. S9 ◽  
Author(s):  
Chih-Hao Fang ◽  
Yu-Jung Chang ◽  
Wei-Chun Chung ◽  
Ping-Heng Hsieh ◽  
Chung-Yen Lin ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Subset Selection ◽  
Next Generation ◽  
Mapreduce Framework ◽  
De Novo Genome Assembly ◽  
Generation Sequencing ◽  
High Depth ◽  
Selection Of

scholarly journals Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

PLoS ONE ◽  
2013 ◽  
Vol 8 (4) ◽  
pp. e62856 ◽  
Author(s):  
Yen-Chun Chen ◽  
Tsunglin Liu ◽  
Chun-Hui Yu ◽  
Tzen-Yuh Chiang ◽  
Chi-Chuan Hwang
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Next Generation Sequencing Data ◽  
Next Generation ◽  
Sequencing Data ◽  
De Novo Genome Assembly ◽  
Gc Bias ◽  
Generation Sequencing

scholarly journals Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

PLoS ONE ◽  
2013 ◽  
Vol 8 (4) ◽  
pp. e60204 ◽  
Author(s):  
Aarti Desai ◽  
Veer Singh Marwah ◽  
Akshay Yadav ◽  
Vineet Jha ◽  
Kishor Dhaygude ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
De Novo ◽  
Sequencing Depth ◽  
Next Generation Sequencing Data ◽  
Next Generation ◽  
Sequencing Data ◽  
De Novo Genome Assembly ◽  
Generation Sequencing

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly

2013 ◽  
Vol 95 (3) ◽  
pp. 441-447 ◽  
Author(s):  
Rommel Thiago Jucá Ramos ◽  
Adriana Ribeiro Carneiro ◽  
Siomar de Castro Soares ◽  
Silvanira Barbosa ◽  
Leonardo Varuzza ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Assembly ◽  
High Efficiency ◽  
De Novo ◽  
Corynebacterium Pseudotuberculosis ◽  
Next Generation ◽  
De Novo Genome Assembly ◽  
Generation Sequencing

Identification of additional therapeutic options for de novo acute myeloid leukemia (AML) patient enabled by next generation sequencing (NGS).

2015 ◽  
Vol 33 (15_suppl) ◽  
pp. e18027-e18027
Author(s):  
Jason G Harb ◽  
Amber N Essenmacher ◽  
Karen-Sue Carlson ◽  
Matthew W Anderson ◽  
Durga P. Dash
Keyword(s):  
Acute Myeloid Leukemia ◽  
Next Generation Sequencing ◽  
Myeloid Leukemia ◽  
De Novo ◽  
Therapeutic Options ◽  
Next Generation ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing ◽  
Acute Myeloid
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