scholarly journals Genome re-sequencing, SNP analysis, and genetic mapping of the parental lines of a commercial F1 hybrid cultivar of Chinese cabbage

2018 ◽  
Vol 68 (3) ◽  
pp. 375-380 ◽  
Author(s):  
Daniel J. Shea ◽  
Motoki Shimizu ◽  
Etsuko Itabashi ◽  
Naomi Miyaji ◽  
Junji Miyazaki ◽  
...  
2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Peirong Li ◽  
Tongbing Su ◽  
Deshuang Zhang ◽  
Weihong Wang ◽  
Xiaoyun Xin ◽  
...  

AbstractHeterosis is a complex phenomenon in which hybrids show better phenotypic characteristics than their parents do. Chinese cabbage (Brassica rapa L. spp. pekinensis) is a popular leafy crop species, hybrids of which are widely used in commercial production; however, the molecular basis of heterosis for biomass of Chinese cabbage is poorly understood. We characterized heterosis in a Chinese cabbage F1 hybrid cultivar and its parental lines from the seedling stage to the heading stage; marked heterosis of leaf weight and biomass yield were observed. Small RNA sequencing revealed 63 and 50 differentially expressed microRNAs (DEMs) at the seedling and early-heading stages, respectively. The expression levels of the majority of miRNA clusters in the F1 hybrid were lower than the mid-parent values (MPVs). Using degradome sequencing, we identified 1,819 miRNA target genes. Gene ontology (GO) analyses demonstrated that the target genes of the MPV-DEMs and low parental expression level dominance (ELD) miRNAs were significantly enriched in leaf morphogenesis, leaf development, and leaf shaping. Transcriptome analysis revealed that the expression levels of photosynthesis and chlorophyll synthesis-related MPV-DEGs (differentially expressed genes) were significantly different in the F1 hybrid compared to the parental lines, resulting in increased photosynthesis capacity and chlorophyll content in the former. Furthermore, expression of genes known to regulate leaf development was also observed at the seedling stage. Arabidopsis plants overexpressing BrGRF4.2 and bra-miR396 presented increased and decreased leaf sizes, respectively. These results provide new insight into the regulation of target genes and miRNA expression patterns in leaf size and heterosis for biomass of B. rapa.


2009 ◽  
Vol 23 (4) ◽  
pp. 573-590 ◽  
Author(s):  
Shuancang Yu ◽  
Fenglan Zhang ◽  
Renbo Yu ◽  
Yanmin Zou ◽  
Jiani Qi ◽  
...  

2012 ◽  
Vol 3 (7) ◽  
pp. 11-13
Author(s):  
Arpita Shrivastava ◽  
◽  
D. K. Mishra D. K. Mishra ◽  
G. K. Koutu G. K. Koutu ◽  
S. K. Singh S. K. Singh

2017 ◽  
Vol 52 (6) ◽  
pp. 1226-1233
Author(s):  
V.I. Fisinin ◽  
◽  
I.A. Egorov ◽  
V.G. Vertiprakhov ◽  
A.A. Grozina ◽  
...  

2011 ◽  
Vol 59 (1) ◽  
pp. 87-102 ◽  
Author(s):  
S. Sood ◽  
N. Kalia ◽  
S. Bhateria

Combining ability and heterosis were calculated for fourteen lines of linseed in a line × tester mating design using twelve lines and two diverse testers in two different environments. The hybrids and parental lines were raised in a completely randomized block design with three replications to investigate seed and fibre yield and their component traits. Genetic variation was significant for most of the traits over environments. Combining ability studies revealed that the lines KL-221 and LCK-9826 were good general combiners for seed yield and most of its components, whereas LMH-62 and LC-2323 were good general combiners for yield components only. Moreover, KL-221 was also a good general combiner for fibre yield. Similarly, B-509 and Ariane were good general combiners for fibre yield and most of its components. Among the specific cross combinations, B-509 × Flak-1 was outstanding for seed yield per plant and B-509 × KL-187 and LC-2323 × LCK-9826 for fibre yield per plant, with high SCA effects. In general, the hybrids excelled their respective parents and the standard checks for most of the characters studied. Based on the comparison of mean performance, SCA effects and the extent of heterosis, the hybrids LC-2323 × LCK-9826 and B-509 × KL-221 appeared to be the most promising for both seed and fibre yield. Other promising combinations were LC-2323 × KL-210 and B-509 × Ariane for seed and fibre yield, respectively. The superiority of LC-2323, LCK-9826, KL-221, B-509 and Ariane as good general combiners was further confirmed by the involvement of these parents in the desirable cross combinations.


2005 ◽  
Vol 18 (102) ◽  
pp. 151-154 ◽  
Author(s):  
Haiqun Cao ◽  
Yongde Yue ◽  
Rimao Hua ◽  
Feng Tang ◽  
Rong Zhang ◽  
...  
Keyword(s):  

2011 ◽  
Vol 152 (22) ◽  
pp. 876-881
Author(s):  
Alajos Pár

The review discusses the genetic polymorphisms involved in the pathogenesis of hepatitis C virus (HCV) infection, that may determine the outcome of disease. In this field earlier both certain major histocompatibility complex (MHC) alleles and some cytokine gene variants have also been studied. Recently, the genome-wide association study (GWAS) and targeted single nucleotide polymorphism (SNP) analysis have revealed that a variant in the promoter region of interleukin-28B (IL-28B) gene is strongly linked to viral clearance and it may be the strongest pretreatment predictor of treatment response in chronic hepatitis C. Last year it was shown that two genetic variants leading to inosine triphosphatase deficiency protect against haemolytic anemia in patients receiving ribavirin during antiviral treatment for chronic HCV infection. Orv. Hetil., 2011, 152, 876–881.


Author(s):  
R.H. Li ◽  
Y.S. Xia ◽  
Y. Li ◽  
L.G. Xu ◽  
H. Zhang ◽  
...  

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