scholarly journals Structural Insight of Dopamine β-Hydroxylase, a Drug Target for Complex Traits, and Functional Significance of Exonic Single Nucleotide Polymorphisms

PLoS ONE ◽  
2011 ◽  
Vol 6 (10) ◽  
pp. e26509 ◽  
Author(s):  
Abhijeet Kapoor ◽  
Manish Shandilya ◽  
Suman Kundu
2020 ◽  
Vol 125 ◽  
pp. 104018
Author(s):  
Opeyemi S. Soremekun ◽  
Chisom Ezenwa ◽  
Itunuoluwa Isewon ◽  
Mahmoud Soliman ◽  
Omotuyi Idowu ◽  
...  

Parasitology ◽  
2010 ◽  
Vol 137 (8) ◽  
pp. 1169-1177 ◽  
Author(s):  
S.-S. LOO ◽  
D. P. BLAKE ◽  
A. MOHD-ADNAN ◽  
R. MOHAMED ◽  
K.-L. WAN

SUMMARYLimitations with current chemotherapeutic and vaccinal control of coccidiosis caused byEimeriaspecies continue to prompt development of novel controls, including the identification of new drug targets. Glucose-6-phosphate isomerase (G6-PI) has been proposed as a valid drug target for many protozoa, although polymorphism revealed by electrophoretic enzyme mobility has raised doubts forEimeria. In this study we identified and sequenced theEimeria tenellaG6-PI orthologue (EtG6-PI) from the reference Houghton strain and confirmed its position within the prevailing taxonomic hierarchy, branching with the Apicomplexa and Plantae, distinct from the Animalia including the host,Gallus gallus. Comparison of the deduced 1647 bpEtG6-PIcoding sequence with the 9016 bp genomic locus revealed 15 exons, all of which obey the intron-AG-/exon/-GT-intron splicing rule. Comparison with the Weybridge and Wisconsin strains revealed the presence of 33 single nucleotide polymorphisms (SNPs) and 14 insertion/deletion sites. Three SNPs were exonic and all yielded non-synonymous substitutions. Preliminary structural predictions suggest little association between the coding SNPs and key G6-PI catalytic residues or residues thought to be involved in the coordination of the G6-PI's substrate phosphate group. Thus, the significant polymorphism from its host orthologue and minimal intra-specific polymorphism suggest G6-PI remains a valid anti-coccidial drug target.


1998 ◽  
Vol 63 (1) ◽  
pp. 225-240 ◽  
Author(s):  
Lue Ping Zhao ◽  
Corinne Aragaki ◽  
Li Hsu ◽  
Filemon Quiaoit

PLoS Genetics ◽  
2005 ◽  
Vol 1 (6) ◽  
pp. e83 ◽  
Author(s):  
Liam R Brunham ◽  
Roshni R Singaraja ◽  
Terry D Pape ◽  
Anish Kejariwal ◽  
Paul D Thomas ◽  
...  

2019 ◽  
Author(s):  
Fernando P. Guerra ◽  
Haktan Suren ◽  
Jason Holliday ◽  
James H. Richards ◽  
Oliver Fiehn ◽  
...  

Abstract Background: Populus trichocarpa is an important forest tree species for the generation of lignocellulosic ethanol. Understanding the genomic basis of biomass production and chemical composition of wood is fundamental in supporting genetic improvement programs. Considerable variation has been observed in this species for complex traits related to growth, phenology, ecophysiology and wood chemistry. Those traits are influenced by both polygenic control and environmental effects, and their genome architecture and regulation are only partially understood. Genome wide association studies (GWAS) represent an approach to advance that aim using thousands of single nucleotide polymorphisms (SNPs). Genotyping using exome capture methodologies represent an efficient approach to perform GWAS. Results: A GWAS using 461 P. trichocarpa clones, representing 101 provenances collected from Oregon and Washington, and 813K single nucleotide polymorphisms (SNPs), identified a variable number of significant SNPs in association with the assessed traits. Associated single-markers (q< 0.1) ranged from 3 to 110 per trait. The SNPs had a cumulative effect of up to 40.6% of the phenotypic variation of any given trait. Similarly, multiple-marker analyses detected between 16 and 291 significant windows for the phenotypes. The SNPs resided within genes that encode proteins belonging to different functional classes as well as in intergenic regions. Conclusion: SNP-markers within and proximal to genes associated with traits of importance for biomass production were detected. They contribute to characterize the genomic architecture of P. trichocarpa biomass required to support the development and application of marker breeding technologies.


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