Collisionally Activated Dissociation (CAD)

2016 ◽  
Author(s):  
Kermit K. Murray ◽  
Robert K. Boyd ◽  
Marcos N. Eberlin ◽  
G. John Langley ◽  
Liang Li ◽  
...  
1988 ◽  
Vol 66 (11) ◽  
pp. 2947-2953 ◽  
Author(s):  
Roger S. Mercer ◽  
Alex G. Harrison

The collisionally activated dissociation reactions of the C2 to C5 alkoxide ions have been studied for collisons occurring at 8 keV kinetic energy and also over the range 5 to 100 eV kinetic energy. The alkoxide ions fragment by 1,2-elimination of H2 and/or an alkane. Thus, primary alkoxide ions fragment by elimination of H2 only, secondary alkoxide ions show elimination of H2 and alkane molecules, while tertiary alkoxide ions show elimination of alkanes only. In alkane elimination, loss of CH4 is much more facilie than loss of larger alkanes. For secondary alkoxide ions, where more than one elimination reaction occurs, the energy dependence of fragmentation has been explored over the collision energy range 5 to 100 eV. The results are interpreted in terms of a step-wise mechanism involving formation of an anion-carbonyl compound ion-dipole complex, followed by proton abstraction by the H− or alkyl anion leading to the final products. The relative importance of the reaction channels is determined by the relative stabilities of these ion-dipole complexes.


1983 ◽  
Vol 66 (6) ◽  
pp. 1470-1477
Author(s):  
Ronald D Plattner ◽  
Glenn A Bennett

Abstract The Fusarium mycotoxins deoxynivalenol (DON) and zearalenone can be detected rapidly in a crude extract of a grain matrix by quadrupole mass spectrometry/ mass spectrometric analysis of the collisionally activated dissociation (CAD) daughter fragments of the protonated molecule. Detection limits were as low as 0.1 ppm. The 2 toxins were detected in a single analysis. Monitoring the CATJ daughters of the negative ion m/z 248 of DON eliminated most interferences from the grain matrix and produced daughter spectra identical to those produced from an authentic standard.


2019 ◽  
Vol 47 (14) ◽  
pp. 7223-7234 ◽  
Author(s):  
Elisabeth Fuchs ◽  
Christoph Falschlunger ◽  
Ronald Micura ◽  
Kathrin Breuker

Abstract The catalytic strategies of small self-cleaving ribozymes often involve interactions between nucleobases and the ribonucleic acid (RNA) backbone. Here we show that multiply protonated, gaseous RNA has an intrinsic preference for the formation of ionic hydrogen bonds between adenine protonated at N3 and the phosphodiester backbone moiety on its 5′-side that facilitates preferential phosphodiester backbone bond cleavage upon vibrational excitation by low-energy collisionally activated dissociation. Removal of the basic N3 site by deaza-modification of adenine was found to abrogate preferential phosphodiester backbone bond cleavage. No such effects were observed for N1 or N7 of adenine. Importantly, we found that the pH of the solution used for generation of the multiply protonated, gaseous RNA ions by electrospray ionization affects phosphodiester backbone bond cleavage next to adenine, which implies that the protonation patterns in solution are at least in part preserved during and after transfer into the gas phase. Our study suggests that interactions between protonated adenine and phosphodiester moieties of RNA may play a more important mechanistic role in biological processes than considered until now.


2005 ◽  
Vol 83 (11) ◽  
pp. 1921-1935 ◽  
Author(s):  
John A Stone ◽  
Timothy Su ◽  
Dragic Vukomanovic

The singly and doubly charged Cu(II)–DMSO complexes formed by electrospray have been examined by CAD and computation. The CAD spectra were obtained as a function of collision energy. The doubly charged ions, [Cu(DMSO)n]2+, were observed only for n ≥ 2. For n = 3, dissociation leads mainly to [Cu(DMSO)2]+ + DMSO+, with only a trace of [Cu(DMSO)2]2+. Although [Cu(DMSO)]2+ was never detected, computation shows that the n = 1 complex exists in a potential well. Loss of DMSO+ is computed to be exothermic for n = 1–3, the exothermicity decreasing as n increases. The singly charged complexes in the ESI spectra were [CuX(DMSO)n]+ (X = Cl, Br, NO3, HSO4, n = 1 or 2). The CAD spectra showed competition between electron transfer from anion to metal followed by loss of X and loss of DMSO+. Experiment and computation show that for [CuX(DMSO)]+, loss of X is the preferred decomposition at low collision energy. NBO analysis shows that electron transfer to Cu from DMSO decreases in [Cu(DMSO)n]2+ as n increases, the bonding becoming more electrostatic and less covalent. In [CuX(DMSO)n]+, the negative charge on X is much less than unity with most of the difference appearing on the DMSO ligand(s).Key words: copper–DMSO complexes, electrospray, CAD, structures.


1992 ◽  
Vol 125 (1) ◽  
pp. 177-181 ◽  
Author(s):  
Ernst Anders ◽  
Rainer Koch ◽  
Alan R. Katritzky ◽  
N. Malhotra ◽  
John R. Eyler ◽  
...  

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