Navigation of migratory songbirds: a quantum magnetic compass sensor

Neuroforum ◽  
2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Siu Ying Wong ◽  
Anders Frederiksen ◽  
Maja Hanić ◽  
Fabian Schuhmann ◽  
Gesa Grüning ◽  
...  
Keyword(s):  
Computational Models ◽  
Migratory Birds ◽  
Radical Pair ◽  
Spin Dynamics ◽  
Computational Simulation ◽  
Quantum Mechanical ◽  
Radical Pair Mechanism ◽  
Simulation Techniques ◽  
Migratory Songbirds ◽  
Mechanical Basis

Abstract The remarkable ability of migratory birds to navigate accurately using the geomagnetic field for journeys of thousands of kilometres is currently thought to arise from radical pair reactions inside a protein called cryptochrome. In this article, we explain the quantum mechanical basis of the radical pair mechanism and why it is currently the dominant theory of compass magnetoreception. We also provide a brief account of two important computational simulation techniques that are used to study the mechanism in cryptochrome: spin dynamics and molecular dynamics. At the end, we provide an overview of current research on quantum mechanical processes in avian cryptochromes and the computational models for describing them.

scholarly journals Radical pairs may play a role in microtubule reorganization

2021 ◽  
Author(s):  
Hadi ZADEH-HAGHIGHI ◽  
Christoph Simon
Keyword(s):  
Magnetic Field ◽  
Radical Pair ◽  
Spin Dynamics ◽  
Radical Pair Mechanism ◽  
Magnetic Field Effects ◽  
Radical Pairs ◽  
Quantum Theories ◽  
Mechanism Model ◽  
Field Effects ◽  
Isotopic Dependence

The exact mechanism behind general anesthesia remains an open question in neuroscience. It has been proposed that anesthetics selectively prevent consciousness and memory via acting on microtubules (MTs). It is known that the magnetic field modulates MT organization. A recent study shows that a radical pair model can explain the isotope effect in xenon-induced anesthesia and predicts magnetic field effects on anesthetic potency. Further, reactive oxygen species are also implicated in MT stability and anesthesia. Based on a simple radical pair mechanism model and a simple mathematical model of MT organization, we show that magnetic fields can modulate spin dynamics of naturally occurring radical pairs in MT. We show that the spin dynamics influence a rate in the reaction cycle, which translates into a change in the MT density. We can reproduce magnetic field effects on the MT concentration that have been observed. Our model also predicts additional effects at slightly higher fields. Our model further predicts that the effect of zinc on the MT density exhibits isotopic dependence. The findings of this work make a connection between microtubule-based and radical pair-based quantum theories of consciousness.

scholarly journals The magnetic compass mechanisms of birds and rodents are based on different physical principles

2006 ◽  
Vol 3 (9) ◽  
pp. 583-587 ◽  
Author(s):  
Peter Thalau ◽  
Thorsten Ritz ◽  
Hynek Burda ◽  
Regina E Wegner ◽  
Roswitha Wiltschko
Keyword(s):  
Geomagnetic Field ◽  
Migratory Birds ◽  
Radical Pair ◽  
Broad Band ◽  
Static Field ◽  
Magnetic Compass ◽  
Radical Pair Mechanism ◽  
Zeeman Frequency ◽  
Compass Mechanisms ◽  
Physical Principles

Recently, oscillating magnetic fields in the MHz-range were introduced as a useful diagnostic tool to identify the mechanism underlying magnetoreception. The effect of very weak high-frequency fields on the orientation of migratory birds indicates that the avian magnetic compass is based on a radical pair mechanism. To analyse the nature of the magnetic compass of mammals, we tested rodents, Ansell's mole-rats, using their tendency to build their nests in the southern part of the arena as a criterion whether or not they could orient. In contrast to birds, their orientation was not disrupted when a broad-band field of 0.1–10 MHz of 85 nT or a 1.315 MHz field of 480 nT was added to the static geomagnetic field of 46 000 nT. Even increasing the intensity of the 1.315 MHz field (Zeeman frequency in the local geomagnetic field) to 4800 nT, more than a tenth of the static field, the mole-rats remained unaffected and continued to build their nests in the south. These results indicate that in contrast to that of birds, their magnetic compass does not involve radical pair processes; it seems to be based on a fundamentally different principle, which probably involves magnetite.

scholarly journals Cryptochrome expression in avian UV cones: revisiting the role of CRY1 as magnetoreceptor

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Atticus Pinzon-Rodriguez ◽  
Rachel Muheim
Keyword(s):  
Zebra Finch ◽  
Migratory Birds ◽  
Radical Pair ◽  
Magnetic Compass ◽  
Radical Pair Mechanism ◽  
Type Ii ◽  
Light Activation ◽  
Functional Changes ◽  
Circadian Expression

AbstractCryptochromes (CRY) have been proposed as putative magnetoreceptors in vertebrates. Localisation of CRY1 in the UV cones in the retinas of birds suggested that it could be the candidate magnetoreceptor. However, recent findings argue against this possibility. CRY1 is a type II cryptochrome, a subtype of cryptochromes that may not be inherently photosensitive, and it exhibits a clear circadian expression in the retinas of birds. Here, we reassessed the localisation and distribution of CRY1 in the retina of the zebra finch. Zebra finches have a light-dependent magnetic compass based on a radical-pair mechanism, similar to migratory birds. We found that CRY1 colocalised with the UV/V opsin (SWS1) in the outer segments of UV cones, but restricted to the tip of the segments. CRY1 was found in all UV cones across the entire retina, with the highest densities near the fovea. Pre-exposure of birds to different wavelengths of light did not result in any difference in CRY1 detection, suggesting that CRY1 did not undergo any detectable functional changes as result of light activation. Considering that CRY1 is likely not involved in magnetoreception, our findings open the possibility for an involvement in different, yet undetermined functions in the avian UV/V cones.

scholarly journals The quantum needle of the avian magnetic compass

2016 ◽  
Vol 113 (17) ◽  
pp. 4634-4639 ◽  
Author(s):  
Hamish G. Hiscock ◽  
Susannah Worster ◽  
Daniel R. Kattnig ◽  
Charlotte Steers ◽  
Ye Jin ◽  
...  
Keyword(s):  
Migratory Birds ◽  
Radical Pair ◽  
Spin Dynamics ◽  
Energy Levels ◽  
Magnetic Compass ◽  
Spin Coherence ◽  
Radical Pairs ◽  
Sharp Feature ◽  
In The Wild ◽  
Dynamics Simulations

Migratory birds have a light-dependent magnetic compass, the mechanism of which is thought to involve radical pairs formed photochemically in cryptochrome proteins in the retina. Theoretical descriptions of this compass have thus far been unable to account for the high precision with which birds are able to detect the direction of the Earth's magnetic field. Here we use coherent spin dynamics simulations to explore the behavior of realistic models of cryptochrome-based radical pairs. We show that when the spin coherence persists for longer than a few microseconds, the output of the sensor contains a sharp feature, referred to as a spike. The spike arises from avoided crossings of the quantum mechanical spin energy-levels of radicals formed in cryptochromes. Such a feature could deliver a heading precision sufficient to explain the navigational behavior of migratory birds in the wild. Our results (i) afford new insights into radical pair magnetoreception, (ii) suggest ways in which the performance of the compass could have been optimized by evolution, (iii) may provide the beginnings of an explanation for the magnetic disorientation of migratory birds exposed to anthropogenic electromagnetic noise, and (iv) suggest that radical pair magnetoreception may be more of a quantum biology phenomenon than previously realized.

scholarly journals Cryptochrome Expression in Avian UV Cones: Revisiting the Role of Cry1 As Magnetoreceptor

2020 ◽  
Author(s):  
Atticus Pinzon-Rodriguez ◽  
Rachel Muheim
Keyword(s):  
Zebra Finch ◽  
Migratory Birds ◽  
Radical Pair ◽  
Magnetic Compass ◽  
Radical Pair Mechanism ◽  
Type Ii ◽  
Light Activation ◽  
Functional Changes ◽  
Circadian Expression

Abstract Cryptochromes (Cry) have been proposed as putative magnetoreceptors in vertebrates. Localisation of Cry1 in the UV cones in the retinas of birds suggested that it could be the candidate magnetoreceptor. However, recent findings argue against this possibility. Cry1 is a type II cryptochrome, a subtype of cryptochromes that may not be inherently photosensitive, and it exhibits a clear circadian expression in the retinas of birds. Here, we reassessed the localization and distribution of Cry1 in the retina of the zebra finch. Zebra finches have a light-dependent magnetic compass based on a radical-pair mechanism, similar to migratory birds. We found that Cry1 colocalized with the UV/V opsin (SWS1) in the outer segments of UV cones, but restricted to the tip of the segments. Cry1 was expressed in all UV cones across the entire retina, with the highest densities near the fovea. Pre-exposure of birds to different wavelengths of light did not result in any difference in Cry1 expression, suggesting that Cry1 did not undergo any detectable functional changes as result of light activation. Considering that Cry1 is likely not involved in magnetoreception, our findings open the possibility for an involvement in different, yet undetermined functions in the avian UV/V cones.

Application of the radical pair mechanism to free radicals in organized systems: Can the effects of 60 Hz be predicted from studies under static fields?

1994 ◽  
Vol 15 (6) ◽  
pp. 549-554 ◽  
Author(s):  
J. C. Scaiano ◽  
N. Mohtat ◽  
F. L. Cozens ◽  
J. McLean ◽  
A. Thansandote
Keyword(s):  
Free Radicals ◽  
Radical Pair ◽  
Radical Pair Mechanism

scholarly journals Population Dynamics Based on Resource Availability & Founding Effects: Live & Computational Models

2016 ◽  
Vol 78 (5) ◽  
pp. 396-403 ◽  
Author(s):  
Samuel Potter ◽  
Rebecca M. Krall ◽  
Susan Mayo ◽  
Diane Johnson ◽  
Kim Zeidler-Watters ◽  
...  
Keyword(s):  
Population Dynamics ◽  
Computer Literacy ◽  
Computational Models ◽  
Computational Simulation ◽  
School Science ◽  
Simulation Software ◽  
High School Science ◽  
Initial Population ◽  
College Level ◽  
Factors Affecting

With the looming global population crisis, it is more important now than ever that students understand what factors influence population dynamics. We present three learning modules with authentic, student-centered investigations that explore rates of population growth and the importance of resources. These interdisciplinary modules integrate biology, mathematics, and computer-literacy concepts aligned with the Next Generation Science Standards. The activities are appropriate for middle and high school science classes and for introductory college-level biology courses. The modules incorporate experimentation, data collection and analysis, drawing conclusions, and application of studied principles to explore factors affecting population dynamics in fruit flies. The variables explored include initial population structure, food availability, and space of the enclosed population. In addition, we present a computational simulation in which students can alter the same variables explored in the live experimental modules to test predictions on the consequences of altering the variables. Free web-based graphing (Joinpoint) and simulation software (NetLogo) allows students to work at home or at school.

Sign in / Sign up

Export Citation Format

Share Document