scholarly journals Timing of gene expression in a cell‐fate decision system

2018 ◽  
Vol 14 (4) ◽  
Author(s):  
Delphine Aymoz ◽  
Carme Solé ◽  
Jean‐Jerrold Pierre ◽  
Marta Schmitt ◽  
Eulàlia de Nadal ◽  
...  

Nature ◽  
2006 ◽  
Vol 439 (7075) ◽  
pp. 502-502
Author(s):  
Alejandro Colman-Lerner ◽  
Andrew Gordon ◽  
Eduard Serra ◽  
Tina Chin ◽  
Orna Resnekov ◽  
...  


Nature ◽  
2005 ◽  
Vol 437 (7059) ◽  
pp. 699-706 ◽  
Author(s):  
Alejandro Colman-Lerner ◽  
Andrew Gordon ◽  
Eduard Serra ◽  
Tina Chin ◽  
Orna Resnekov ◽  
...  


2017 ◽  
Author(s):  
Delphine Aymoz ◽  
Carme Solé ◽  
Jean-Jerrold Pierre ◽  
Marta Schmitt ◽  
Eulàlia de Nadal ◽  
...  

AbstractDuring development, morphogens provide extracellular cues allowing cells to select a specific fate by inducing complex transcriptional programs. The mating pathway in budding yeast offers simplified settings to understand this process. Pheromone secreted by the mating partner triggers the activity of a MAPK pathway, which results in the expression of hundreds of genes. Using a dynamic expression reporter, we quantified the kinetics of gene expression in single cells upon exogenous pheromone stimulation and in the physiological context of mating. In both conditions, we observed striking differences in the timing of induction of mating-responsive promoters. Biochemical analyses and generation of synthetic promoter variants demonstrated how the interplay between transcription factor binding and nucleosomes contribute to determine the kinetics of transcription in a simplified cell-fate decision system.One Sentence SummaryQuantitative and dynamic single cell measurements in the yeast mating pathway uncover a complex temporal orchestration of gene expression events.



PLoS Genetics ◽  
2012 ◽  
Vol 8 (6) ◽  
pp. e1002732 ◽  
Author(s):  
Sudeep D. Agarwala ◽  
Hannah G. Blitzblau ◽  
Andreas Hochwagen ◽  
Gerald R. Fink


Science ◽  
2019 ◽  
Vol 366 (6461) ◽  
pp. 116-120 ◽  
Author(s):  
Nathan D. Lord ◽  
Thomas M. Norman ◽  
Ruoshi Yuan ◽  
Somenath Bakshi ◽  
Richard Losick ◽  
...  

Cell fate decision circuits must be variable enough for genetically identical cells to adopt a multitude of fates, yet ensure that these states are distinct, stably maintained, and coordinated with neighboring cells. A long-standing view is that this is achieved by regulatory networks involving self-stabilizing feedback loops that convert small differences into long-lived cell types. We combined regulatory mutants and in vivo reconstitution with theory for stochastic processes to show that the marquee features of a cell fate switch in Bacillus subtilis—discrete states, multigenerational inheritance, and timing of commitments—can instead be explained by simple stochastic competition between two constitutively produced proteins that form an inactive complex. Such antagonistic interactions are commonplace in cells and could provide powerful mechanisms for cell fate determination more broadly.



BIOPHYSICS ◽  
2012 ◽  
Vol 8 ◽  
pp. 41-50 ◽  
Author(s):  
Yohei Murakami ◽  
Shoji Takada


2019 ◽  
Vol 29 (18) ◽  
pp. 3094-3100.e4 ◽  
Author(s):  
Michelle A. Attner ◽  
Wolfgang Keil ◽  
Justin M. Benavidez ◽  
Iva Greenwald


Nature ◽  
2005 ◽  
Vol 433 (7028) ◽  
pp. 813-814 ◽  
Author(s):  
Ellen A. Robey


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