scholarly journals High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation

2016 ◽  
Vol 6 (4) ◽  
pp. 993-1012 ◽  
Author(s):  
Timothy Hoggard ◽  
Ivan Liachko ◽  
Cassaundra Burt ◽  
Troy Meikle ◽  
Katherine Jiang ◽  
...  
2017 ◽  
Author(s):  
Delphine Quénet ◽  
David Sturgill ◽  
Marin Olson ◽  
Yamini Dalal

ABSTRACTTranscription occurs ubiquitously throughout non-coding parts of the genome, including at repetitive α-satellite DNA elements which comprise the majority of human centromeres. The function of temporally regulated centromeric transcription, and transcripts, is consequently a topic of intense investigation. In this study, we use high throughput approaches to identify and describe lncRNAs associated with the centromere specific histone variant CENP-A that arise from the transcription of specific centromeres at early G1, which we then show are physically associated with centromeres, and which are functionally necessary for accurate chromosome segregation. Targeted depletion of one such centromeric RNA, which originates from a single centromere, is sufficient to increase the frequency of chromosome segregation defects. These data support the emerging paradigm of the necessity of centromere-specific lncRNAs in the integrity of faithful chromosome segregation.


2019 ◽  
Vol 39 (2) ◽  
pp. 280-292
Author(s):  
Akinori Iguchi ◽  
Masaki Ikarashi ◽  
Akiko Maruyama ◽  
Saori (Ujiie) Hori ◽  
Kazuki Nomura ◽  
...  

2018 ◽  
Vol 19 (2) ◽  
Author(s):  
Veronica A. Segarra ◽  
Carrie Wilson ◽  
Kelley Lowery ◽  
Slade Ransdell ◽  
Jamie Schnuck ◽  
...  

2014 ◽  
Vol 6 (7) ◽  
pp. 685-693 ◽  
Author(s):  
Xianjie Kang ◽  
Lingli Jiang ◽  
Xi Chen ◽  
Haiyu Yuan ◽  
Chunxiong Luo ◽  
...  

With a simple but robust well-based microfluidic device, we can high-throughput load and trace dozens of different budding yeast strains at single cell level simultaneously, providing precise cell information such as cell size, cell cycle, protein localization and protein expression level.


2018 ◽  
Vol 5 (4) ◽  
pp. 106 ◽  
Author(s):  
Zachery R. Belak ◽  
Troy Harkness ◽  
Christopher H. Eskiw

Author(s):  
Anand Ranjan ◽  
Feng Wang ◽  
Gaku Mizuguchi ◽  
Debbie Wei ◽  
Yingzi Huang ◽  
...  

2013 ◽  
Vol 368 (1629) ◽  
pp. 20130118 ◽  
Author(s):  
Erin Styles ◽  
Ji-Young Youn ◽  
Mojca Mattiazzi Usaj ◽  
Brenda Andrews

The budding yeast Saccharomyces cerevisiae has been used extensively for the study of cell polarity, owing to both its experimental tractability and the high conservation of cell polarity and other basic biological processes among eukaryotes. The budding yeast has also served as a pioneer model organism for virtually all genome-scale approaches, including functional genomics, which aims to define gene function and biological pathways systematically through the analysis of high-throughput experimental data. Here, we outline the contributions of functional genomics and high-throughput methodologies to the study of cell polarity in the budding yeast. We integrate data from published genetic screens that use a variety of functional genomics approaches to query different aspects of polarity. Our integrated dataset is enriched for polarity processes, as well as some processes that are not intrinsically linked to cell polarity, and may provide new areas for future study.


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