scholarly journals Potential Mortalin-p53 complex abrogation of ent-kaurane diterpenoids from Croton tonkinensis revealed by homology modeling and docking simulation

2021 ◽  
Vol 58 (6A) ◽  
pp. 261
Author(s):  
Quan Minh PHAM ◽  
Hai Viet HA ◽  
Nghi Huu DO ◽  
Hung Viet DAO ◽  
Thu Le Thi VU

Seven ent-kaurane diterpenoids from Croton tonkinensis were tested for cytotoxicity against human HCC HepG2 cell line. The abrogation of mortalin-p53 interaction represent an original anticancer therapeutic approach. Teritary structure of protein mortalin was constructed using Protein Structure Prediction Server and crystal structure of p53 was selected from Protein Data Bank involving mortalin-p53 binding domain. Molecular docking studies revealed that the interaction with protein mortalin is more prominent than p53   compound 5 and 1 as the most two potential mortalin-p53 binding inhibitors based on binding free energy and interacting residues analysis.

2020 ◽  
Vol 22 (10) ◽  
pp. 716-727
Author(s):  
Malihe Akhavan ◽  
Naser Foroughifar ◽  
Hoda Pasdar ◽  
Ahmadreza Bekhradnia

Aim and Objective: The magic scaffolds rhodanine and thiazolidine are very important heterocyclic compounds in drug design and discovery. Those are important heterocyclic compounds that have attracted a great deal of attention due to the fact that they exhibit a variety of bioactivities including antibacterial, antifungal, antiviral, antimalarial, and anti-inflammatory activities. These agents often exhibit selective toxicity. The goal of this study was molecular docking, green and solvent-free efficient synthesis of a new series of hetero/aromatic substituted rhodanine and thiazolidine analogues and then investigation of their antimicrobial activity. Materials and Methods: To a mixture of TZD or rhodanine (1 mmol) in the presence of ionic liquid ChCl/urea, various aldehyde (1 mmol) was added. After completion of the reaction, obtained crude compound was collected by filtration and products were recrystallized from ethanol. The binding-free energy between all synthesized compounds with 3EEJ protein (C. glabrata enzyme) were obtained by molecular docking studies. These compounds were evaluated using microdilution method against (ATCC 6538) and (ATCC 12228) Gram-negative, (ATCC 8739) and (ATCC 9027) as Gram-positive and (ATCC 1012), (ATCC 339), C. (ATCC 1057), (ATCC 503), (ATCC 340) and (ATCC 194) as fungi. Results: All of the acceptable products were determined by 1H NMR, 13C NMR, Mas and FT-IR spectroscopy. The binding-free energy between compounds 10a and 10b with 3EEJ protein were found to be -8.08 kcal/mol and -8.15 kcal/mol, respectively. These compounds having a heteroaromatic ring attached to the TZD or rhodanine core showed excellent antimicrobial activity with MIC values of 0.25-8 μg/mL (compound 10a) and 0.5-16 μg/mL (compound 10b) against the most tested fungi strains, Gram-positive and Gram-negative bacteria. Conclusion: A convenient and rapid method has been developed for the synthesis of rhodanine and thiazolidine-2,4-dione (TZD) derivatives as efficient antimicrobial agents using a Deep Eutectic Ionic Liquids (DEILs) choline chloride urea under solvent-free condition. Among the newly synthesized compounds, (Z)-5-((quinoxalin-3-yl) methylene) thiazolidine-2, 4-dione (10a) and (Z)- 5- ((quinoxalin-3-yl) methylene)-2-thioxothiazolidin-one (10b) exerted the promising effect and these compounds can be considered to be further probed as inhibitors of cgDHFR enzyme.


Author(s):  
Ting Wang ◽  
Yaquan Liu ◽  
Xuming Zhuang ◽  
Feng Luan ◽  
Chunyan Zhao

Aim and Objective: Isoflavone phytoestrogens, which commonly present in natural plants, are closely related to human health. The combination of them with estrogen receptors in the body can play a more important role in the prevention and treatment of cardiovascular diseases, cancer, and menopausal diseases. This research is conducted for the wider application of isoflavone phytoestrogens in various fields. Method: In this study, molecular docking studies and molecular dynamics simulations were performed to explore the affinities and interaction between three typical isoflavone phytoestrogens and estrogen receptors (ERα and ERβ), respectively. Results and Conclusion: Molecular docking results showed that the affinity of genistein, daidzein and formononetin was different, and the ligand structures and hydrogen bonds force were the main factors affecting the binding abilities. The calculation of the binding free energy shows the stability of the complex and the contribution of various interactions to the binding free energy. The decomposition of binding free energy indicates that van der Waals interaction and electrostatic interaction promote the binding of the complex, which are in agreement with the docking studies.


2014 ◽  
Vol 62 (46) ◽  
pp. 11070-11079 ◽  
Author(s):  
Renbo Xu ◽  
Ming Luo ◽  
Rui Xia ◽  
Xiaoqing Meng ◽  
Xiaoyong Xu ◽  
...  

Author(s):  
Balasubramanian Karpagam ◽  
Murugesan Sankarganesh ◽  
Lokesh Ravi ◽  
Mookkandi Palsamy Kesavan ◽  
Gujuluva Gangatharan Vinothkumar ◽  
...  

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