Additional information for the creation of a high-quality draft genome for Melaleuca alternifolia (tea tree) v1

protocols.io ◽  
2021 ◽  
Author(s):  
Julia Voelker
Gigabyte ◽  
2021 ◽  
Vol 2021 ◽  
pp. 1-15
Author(s):  
Julia Voelker ◽  
Mervyn Shepherd ◽  
Ramil Mauleon

The economically important Melaleuca alternifolia (tea tree) is the source of a terpene-rich essential oil with therapeutic and cosmetic uses around the world. Tea tree has been cultivated and bred in Australia since the 1990s. It has been extensively studied for the genetics and biochemistry of terpene biosynthesis. Here, we report a high quality de novo genome assembly using Pacific Biosciences and Illumina sequencing. The genome was assembled into 3128 scaffolds with a total length of 362 Mb (N50  = 1.9 Mb), with significantly higher contiguity than a previous assembly (N50  = 8.7 Kb). Using a homology-based, RNA-seq evidence-based and ab initio prediction approach, 37,226 protein-coding genes were predicted. Genome assembly and annotation exhibited high completeness scores of 98.1% and 89.4%, respectively. Sequence contiguity was sufficient to reveal extensive gene order conservation and chromosomal rearrangements in alignments with Eucalyptus grandis and Corymbia citriodora genomes. This new genome advances currently available resources to investigate the genome structure and gene family evolution of M. alternifolia. It will enable further comparative genomic studies in Myrtaceae to elucidate the genetic foundations of economically valuable traits in this crop.


Aquaculture ◽  
2021 ◽  
pp. 736954
Author(s):  
Tamires R. dos Reis ◽  
Matheus D. Baldissera ◽  
Carine F. Souza ◽  
Bernardo Baldisserotto ◽  
Julia Corá Segat ◽  
...  

2021 ◽  
Author(s):  
Dimitrios Ververidis ◽  
Panagiotis Migkotzidis ◽  
Efstathios Nikolaidis ◽  
Eleftherios Anastasovitis ◽  
Anastasios Papazoglou Chalikias ◽  
...  

2014 ◽  
Vol 9 (1) ◽  
Author(s):  
Oleg Mediannikov ◽  
Thi-Thien Nguyen ◽  
Lesley Bell-Sakyi ◽  
Roshan Padmanabhan ◽  
Pierre-Edouard Fournier ◽  
...  

2010 ◽  
Vol 58 (5) ◽  
pp. 373 ◽  
Author(s):  
L. Baskorowati ◽  
M. W. Moncur ◽  
J. C. Doran ◽  
P. J. Kanowski

Melaleuca alternifolia (Maiden & Betche) Cheel is commercially important as the source of essential oil for the Australian tea tree-oil industry. Information on reproductive biology of M. alternifolia is important to the Australian breeding program directed at improving the quality and quantity of tea tree oil. Flowering in three geographically separated sites – two planted seed orchards and one managed natural population, all in NSW – was observed in the present study, with supporting data obtained from glasshouse-grown plants in Canberra. The majority of the work was conducted from 2004 to 2007, although the study also drew on some prior observations. M. alternifolia has spikes of flowers that open acropetally over a 6-day period. No strong separation of male and female phases was found in any individual flower; pollen was shed by 1.4 days after anthesis and the stigma reached peak receptivity 3–5 days after anthesis. Dichogamy and acropetal floral development may lead to geitonogamy. Flowering occurred during the months of October–November, with the peak in November, and was synchronous across all three sites. Flowering intensity and success in producing capsules appeared to be associated with total spring rainfall. Initiation of flowering in M. alternifolia appears to be correlated with daylength, or an environmental parameter closely correlated with daylength. Flowering intensity varied considerably among the years surveyed, sites and families, and appears to be promoted by a period of winter minimum temperatures below 5°C. In M. alternifolia, the morphological development of buds, flowers and fruit leading to the development of mature seed takes place over a period 16–18 months from flowering. M. alternifolia differed significantly in the number of viable seeds per capsule from individual trees, from 26 ± 3.8 to 57 ± 3.8 germinants.


2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jennifer Town ◽  
Patrice Audy ◽  
Susan M. Boyetchko ◽  
Tim J. Dumonceaux

Pantoea sp. strain OXWO6B1 inhibits the growth of the potato pathogen Phytophthora infestans . We determined the 5.2-Mbp genome sequence of this strain, which featured at least 3 confirmed plasmids of up to 250 kbp. The genome sequence of OXWO6B1 is different from that of all previously sequenced strains of Pantoea .


2013 ◽  
Vol 8 (1) ◽  
pp. 37-46 ◽  
Author(s):  
Erko Stackebrandt ◽  
Olga Chertkov ◽  
Alla Lapidus ◽  
Matt Nolan ◽  
Susan Lucas ◽  
...  

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