scholarly journals SVM and a novel POOL method coupled with THEMATICS for protein active site prediction

2008 ◽  
Author(s):  
Wenxu Tong
Keyword(s):  
Active Site ◽  
Site Prediction ◽  
Protein Active Site

Peroxovanadates and Its Bio-Mimicking Relation with Vanadium Haloperoxidases

2016 ◽  
pp. 197-219
Author(s):  
Pranjal Saikia ◽  
Saitanya Kumar Bharadwaj ◽  
Abu Taleb Miah
Keyword(s):  
Amino Acids ◽  
Active Site ◽  
High Efficiency ◽  
Recombinant Enzymes ◽  
Vanadium Compounds ◽  
Reaction Conditions ◽  
The Cost ◽  
Major Emphasis ◽  
Protein Active Site

Vanadium Haloperoxidases (VHPOs) have been used in a variety of biotransformations showing remarkable stereoselectivity and regiospecificity. The high efficiency of the enzyme is influenced by the protein active site and the role of certain amino acids in activation of vanadium(V)-bound peroxide for halide oxidation. The use of natural or recombinant enzymes, or biomimetic vanadium compounds brings up issues regarding the cost of production and reaction conditions. In this chapter, the primary intent is to provide a simple and clear picture of functional mimicking nature of peroxovanadium compounds with haloperoxidases enzymes to the readers. Major emphasis would be given to examine the reactivity of the vanadium haloperoxidases with mechanism.

A Mimic Molecule of Blue Copper Protein Active Site [(−)-Sparteine-N,N‘](maleonitriledithiolato-S,S‘)copper(II)

2001 ◽  
Vol 40 (17) ◽  
pp. 4481-4484 ◽  
Author(s):  
Young-Jin Kim ◽  
Su-Oak Kim ◽  
Young-Inn Kim ◽  
Sung-Nak Choi
Keyword(s):  
Active Site ◽  
Blue Copper Protein ◽  
Blue Copper ◽  
Copper Protein ◽  
Protein Active Site

Generation of Ligand Conformations in Continuum Solvent Consistent with Protein Active Site Topology:  Application to Thrombin

2003 ◽  
Vol 46 (8) ◽  
pp. 1293-1305 ◽  
Author(s):  
Paulette A. Greenidge ◽  
Sandrine A. M. Mérette ◽  
Richard Beck ◽  
Guy Dodson ◽  
Christopher A. Goodwin ◽  
...  
Keyword(s):  
Active Site ◽  
Protein Active Site

scholarly journals Active site prediction using evolutionary and structural information

2010 ◽  
Vol 26 (5) ◽  
pp. 617-624 ◽  
Author(s):  
Sriram Sankararaman ◽  
Fei Sha ◽  
Jack F. Kirsch ◽  
Michael I. Jordan ◽  
Kimmen Sjölander
Keyword(s):  
Active Site ◽  
Structural Information ◽  
Site Prediction

scholarly journals Comparison of protein active site structures for functional annotation of proteins and drug design

2006 ◽  
Vol 65 (1) ◽  
pp. 124-135 ◽  
Author(s):  
Robert Powers ◽  
Jennifer C. Copeland ◽  
Katherine Germer ◽  
Kelly A. Mercier ◽  
Viswanathan Ramanathan ◽  
...  
Keyword(s):  
Drug Design ◽  
Active Site ◽  
Functional Annotation ◽  
Protein Active Site

scholarly journals Homology modeling, active site prediction, and targeting the anti hypertension activity through molecular docking on endothelin – B receptor domain

2012 ◽  
Vol 8 (2) ◽  
pp. 81-86 ◽  
Author(s):  
Daddam Jayasimha Rayalu ◽  
Chandrabose Selvaraj ◽  
Sanjeev Kumar Singh ◽  
Ramakrishan Ganeshan ◽  
Nagapatla Udaya Kumar ◽  
...  
Keyword(s):  
Molecular Docking ◽  
Homology Modeling ◽  
Active Site ◽  
Endothelin B Receptor ◽  
Site Prediction ◽  
Endothelin B ◽  
Receptor Domain
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