scholarly journals A two-species occupancy model accommodating simultaneous spatial and interspecific dependence

Ecology ◽  
2016 ◽  
Vol 97 (1) ◽  
pp. 48-53 ◽  
Author(s):  
Christopher T. Rota ◽  
Christopher K. Wikle ◽  
Roland W. Kays ◽  
Tavis D. Forrester ◽  
William J. McShea ◽  
...  
Oryx ◽  
2014 ◽  
Vol 50 (1) ◽  
pp. 113-120 ◽  
Author(s):  
Igor Berkunsky ◽  
Rosana E. Cepeda ◽  
Claudia Marinelli ◽  
M. Verónica Simoy ◽  
Gonzalo Daniele ◽  
...  

AbstractMonitoring of wild populations is central to species conservation and can pose a number of challenges. To identify trends in populations of parrots, monitoring programmes that explicitly take detectability into account are needed. We assessed an occupancy model that explicitly accounted for detectability as a tool for monitoring the large macaws of Bolivia's Beni savannahs: the blue-throated Ara glaucogularis, blue-and-yellow Ara ararauna and red-and-green macaws Ara chloropterus. We also evaluated the joint presence of the three macaw species and estimated their abundance in occupied areas. We modelled occupancy and detection for the three macaw species by combining several site and visit covariates and we described their conditional occupancy. Macaws occupied two thirds of the surveyed area and at least two species occurred together in one third of this area. Probability of detection was 0.48–0.86. For each macaw species, occupancy was affected by the abundance of the other two species, the richness of cavity-nesting species, and the distance to the nearest village. We identified key priority areas for the conservation of these macaws. The flexibility of occupancy methods provides an efficient tool for monitoring macaw occupancy at the landscape level, facilitating prediction of the range of macaw species at a large number of sites, with relatively little effort. This technique could be used in other regions in which the monitoring of threatened parrot populations requires innovative approaches.


2012 ◽  
Vol 36 (3) ◽  
pp. 432-439 ◽  
Author(s):  
Tiffany M. McFarland ◽  
Heather A. Mathewson ◽  
Julie E. Groce ◽  
Michael L. Morrison ◽  
J. Cal Newnam ◽  
...  

Author(s):  
Trond Reitan ◽  
Torbjørn Ergon ◽  
Lee Hsiang Liow

The occupancy and relative abundance of species are temporally varying. Estimating these, given incomplete and biased sampling is challenging, not least for fossilized organisms, where preservation is an additional issue. Here, we describe a relative abundance-focused multi-species occupancy model (TRAMPOline) in a hierarchical Bayesian framework. We designed our model on the basis of the need to understand the dynamics of several focal species over 2.3 million years, by drawing on additional information provided by non-focal species observed in the same fossilized community. We expanded our model by adding random effects of species and time intervals (geological formations) and explored potential explanatory factors (paleoenvironmental proxies) and temporal autocorrelation that could provide extra information on unsampled geological time intervals. Our new model, set in an occupancy modeling framework widely used in ecology but little applied in paleoecology, is applicable across a wide range of questions on species-level dynamics in contemporary and palaeoecological community settings.


2018 ◽  
Vol 11 (1) ◽  
pp. 14-24
Author(s):  
Chabi A.M.S. Djagoun ◽  
Etotépé A. Sogbohossou ◽  
Barthélémy Kassa ◽  
Christian B. Ahouandjinou ◽  
Hugues A. Akpona ◽  
...  

Background: The habitat degradation together with fragmentation and illegal hunting represent a major threat for biodiversity conservation in Lama protected areas. Method: We used a combination of questionnaire survey with local communities for ranking the hunted mammal species as bushmeat and track surveys in gridded-cell system of 500x500 m2 (n=268) to assess at what extend the management design, the anthropogenic factors and habitat type affect the occupancy model of those mammal species. Results: Twenty mammal species have been predominantly reported by the local inhabitants to consume bushmeat species and 5 of them have been identified as the most preferable as hunted game mammals. The selection of the preferred habitat among the swampy forest, the dense forest, the tree plantations and cropland for the prioritized game species varies between species but looks similar when grouping in different orders. Some bushmeat species were found to select the more secure habitat (natural forest); suggesting the zoning system in the Lama forest can passively protect those species. However, some species such as T. swinderianus although highly hunted showed preference to anthropogenic habitat, avoiding the well secured core zone in Lama Forest. Conclusion: Our findings highlighted the importance of the zoning system with different management objectives in the habitat occupancy model of the highly hunted wildlife species.


Science ◽  
2021 ◽  
Vol 371 (6529) ◽  
pp. 633-636 ◽  
Author(s):  
E. A. Riddell ◽  
K. J. Iknayan ◽  
L. Hargrove ◽  
S. Tremor ◽  
J. L. Patton ◽  
...  

High exposure to warming from climate change is expected to threaten biodiversity by pushing many species toward extinction. Such exposure is often assessed for all taxa at a location from climate projections, yet species have diverse strategies for buffering against temperature extremes. We compared changes in species occupancy and site-level richness of small mammal and bird communities in protected areas of the Mojave Desert using surveys spanning a century. Small mammal communities remained remarkably stable, whereas birds declined markedly in response to warming and drying. Simulations of heat flux identified different exposure to warming for birds and mammals, which we attribute to microhabitat use. Estimates from climate projections are unlikely to accurately reflect species’ exposure without accounting for the effects of microhabitat buffering on heat flux.


Ecology ◽  
2021 ◽  
Author(s):  
Hannah L. Clipp ◽  
Amber L. Evans ◽  
Brin E. Kessinger ◽  
Kenneth Kellner ◽  
Christopher T. Rota

Author(s):  
Robin Boyd ◽  
Nick Isaac ◽  
Robert Cooke ◽  
Francesca Mancini ◽  
Tom August ◽  
...  

Species Distribution Essential Biodiversity Variables (SD EBVs; Pereira et al. 2013, Kissling et al. 2017, Jetz et al. 2019) are defined as measurements or estimates of species’ occupancy along the axes of space, time and taxonomy. In the “ideal” case, additional stipulations have been proposed: occupancy should be characterized contiguously along each axis at grain sizes relevant to policy and process (i.e., fine scale); and the SD EBV should be global in extent, or at least span the entirety of the focal taxa’s geographical range (Jetz et al. 2019). These stipulations set the bar very high and, unsurprisingly, most operational SD EBVs fall short of these ideal criteria. In this presentation, I will discuss the major challenges associated with developing the idealized SD EBV. I will demonstrate these challenges using an operational SD EBV spanning ~6000 species in the United Kingdom (UK) over the period 1970 to 2019 as a case study (Outhwaite et al. 2019). In short, this data product comprises annual estimates of occupancy for each species in all sampled 1 km cells across the UK; these are derived from opportunistically-collected species occurrence data using occupancy-detection models (Kéry et al. 2010). Having discussed which of the “ideal” criteria the case study satisfies, I will then touch on what are, in my view, two underappreciated challenges when constructing SD EBVs: dealing with sampling biases in the underlying data and the difficulty in evaluating the extent to which they bias the final product. These challenges should be addressed as a matter of urgency, as SD EBVs are increasingly applied in important settings such as underpinning national and international biodiversity indicators (see e.g., https://geobon.org/ebvs/indicators/).


1991 ◽  
Vol 49 (4) ◽  
pp. 303-314 ◽  
Author(s):  
Jüri Allïk ◽  
Tiia Tuulmets
Keyword(s):  

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