scholarly journals Adjusting Mineral Nutrition of Lowbush Blueberry to Agroecosystem Conditions

Author(s):  
Serge-Étienne Parent ◽  
Jean Lafond ◽  
Maxime Paré ◽  
Léon Etienne Parent ◽  
Noura ZIadi

Nutrient management of lowbush blueberry (Vaccinium angustifolium Ait.) depends on several yield-limiting features. Machine learning models can process such yield-impacting variables to predict berry yield. We investigated the effects of local variables on yields and nutrient management of lowbush blueberry. We collected 1504 observations from N-P-K fertilizer trials conducted in Quebec, Canada. Meteorological indices at various phenological stages showed the greatest impact on yield. High mean temperature at flower bud opening and after fruit maturation, and total precipitation at flowering showed positive effects. Low mean temperature and low total precipitation before bud opening, at flowering, and by fruit maturity, as well as number of freezing days (< -5ºC) before flower bud opening, showed negative effects. Soil fertility variables, leaf nutrient compositions and N-P-K fertilization showed smaller effects. Gaussian processes predicted berry yields from historical weather data, soil analysis, fertilizer dosage, and leaf nutrients with a root-mean-square-error of 1447 kg ha-1 on the testing data set. An in-house Markov chain algorithm optimized yields modelled with Gaussian processes from leaf nutrient composition, soil test value, and fertilizer dosage conditioned to specified historical weather features. We propose to use conditioned machine learning models to manage nutrients of lowbush blueberry at local scale.

Plants ◽  
2020 ◽  
Vol 9 (10) ◽  
pp. 1401 ◽  
Author(s):  
Serge-Étienne Parent ◽  
Jean Lafond ◽  
Maxime C. Paré ◽  
Léon Etienne Parent ◽  
Noura Ziadi

Agroecosystem conditions limit the productivity of lowbush blueberry. Our objectives were to investigate the effects on berry yield of agroecosystem and crop management variables, then to develop a recommendation system to adjust nutrient and soil management of lowbush blueberry to given local meteorological conditions. We collected 1504 observations from N-P-K fertilizer trials conducted in Quebec, Canada. The data set, that comprised soil, tissue, and meteorological data, was processed by Bayesian mixed models, machine learning, compositional data analysis, and Markov chains. Our investigative statistical models showed that meteorological indices had the greatest impact on yield. High mean temperature at flower bud opening and after fruit maturation, and total precipitation at flowering stage showed positive effects. Low mean temperature and low total precipitation before bud opening, at flowering, and by fruit maturity, as well as number of freezing days (<−5 °C) before flower bud opening, showed negative effects. Soil and tissue tests, and N-P-K fertilization showed smaller effects. Gaussian processes predicted yields from historical weather data, soil test, fertilizer dosage, and tissue test with a root-mean-square-error of 1447 kg ha−1. An in-house Markov chain algorithm optimized yields modelled by Gaussian processes from tissue test, soil test, and fertilizer dosage as conditioned to specified historical meteorological features, potentially increasing yield by a median factor of 1.5. Machine learning, compositional data analysis, and Markov chains allowed customizing nutrient management of lowbush blueberry at local scale.


2020 ◽  
Author(s):  
Gustau Camps-Valls ◽  
Daniel Svendsen ◽  
Luca Martino ◽  
Adrian Pérez-Suay ◽  
Maria Piles ◽  
...  

&lt;p&gt;Earth observation from remote sensing satellites allows us to monitor the processes occurring on the land cover, water bodies and the atmosphere, as well as their interactions. In the last decade machine learning has impacted the field enormously due to the unprecedented data deluge and emergence of complex problems that need to be tackled (semi)automatically. One of the main problems is to perform estimation of bio-geo-physical parameters from remote sensing observations. In this model inversion setting, Gaussian processes (GPs) are one of the preferred choices for model inversion, emulation, gap filling and data assimilation. GPs do not only provide accurate predictions but also allow for feature ranking, deriving confidence intervals, and error propagation and uncertainty quantification in a principled Bayesian inference framework.&lt;/p&gt;&lt;p&gt;Here we introduce GPs for data analysis in general and to address the forward-inverse problem posed in remote sensing in particular. GPs are typically used for inverse modelling based on concurrent observations and in situ measurements only, or to invert model simulations. We often rely on forward radiative transfer model (RTM) encoding the well-understood physical relations to either perform model inversion with machine learning, or to replace the RTM model with machine learning models, a process known as emulation. We review four novel GP models that respect and learn the physics, and deploy useful machine learning models for remote sensing parameter retrieval and model emulation tasks. First, we will introduce a Joint GP (JGP) model that combines in situ measurements and simulated data in a single GP model for inversion. Second, we present a latent force model (LFM) for GP modelling that encodes ordinary differential equations to blend data and physical models of the system. The LFM performs multi-output regression, can cope with missing data in the time series, and provides explicit latent functions that allow system analysis, evaluation and understanding. Third, we present an Automatic Gaussian Process Emulator (AGAPE) that approximates the forward physical model via interpolation, reducing the number of necessary nodes. Finally, we introduce a new GP model for data-driven regression that respects fundamental laws of physics via dependence-regularization, and provides consistency estimates. All models attain data-driven physics-aware modeling. Empirical evidence of performance of these models will be presented through illustrative examples of vegetation/land monitoring involving multispectral (Landsat, MODIS) and passive microwave (SMOS, SMAP) observations, as well as blending data with radiative transfer models, such as PROSAIL, SCOPE and MODTRAN.&lt;/p&gt;&lt;p&gt;&lt;br&gt;References&lt;/p&gt;&lt;p&gt;&quot;A Perspective on Gaussian Processes for Earth Observation&quot;. Camps-Valls et al. National Science Review 6 (4) :616-618, 2019&lt;/p&gt;&lt;p&gt;&quot;Physics-aware Gaussian processes in remote sensing&quot;. Camps-Valls et al. Applied Soft Computing 68 :69-82, 2018&lt;/p&gt;&lt;p&gt;&quot;A Survey on Gaussian Processes for Earth Observation Data Analysis: A Comprehensive Investigation&quot;. Camps-Valls et al. IEEE Geoscience and Remote Sensing Magazine 2016&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;


2020 ◽  
Vol 2 (1) ◽  
pp. 3-6
Author(s):  
Eric Holloway

Imagination Sampling is the usage of a person as an oracle for generating or improving machine learning models. Previous work demonstrated a general system for using Imagination Sampling for obtaining multibox models. Here, the possibility of importing such models as the starting point for further automatic enhancement is explored.


2021 ◽  
Author(s):  
Norberto Sánchez-Cruz ◽  
Jose L. Medina-Franco

<p>Epigenetic targets are a significant focus for drug discovery research, as demonstrated by the eight approved epigenetic drugs for treatment of cancer and the increasing availability of chemogenomic data related to epigenetics. This data represents a large amount of structure-activity relationships that has not been exploited thus far for the development of predictive models to support medicinal chemistry efforts. Herein, we report the first large-scale study of 26318 compounds with a quantitative measure of biological activity for 55 protein targets with epigenetic activity. Through a systematic comparison of machine learning models trained on molecular fingerprints of different design, we built predictive models with high accuracy for the epigenetic target profiling of small molecules. The models were thoroughly validated showing mean precisions up to 0.952 for the epigenetic target prediction task. Our results indicate that the herein reported models have considerable potential to identify small molecules with epigenetic activity. Therefore, our results were implemented as freely accessible and easy-to-use web application.</p>


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