scholarly journals Molecular cytogenetics of valuable Arctic and sub-Arctic pasture grass species from the Aveneae/Poeae tribe complex (Poaceae)

2019 ◽  
Author(s):  
Alexandra V. Amosova ◽  
Svyatoslav A. Zoshchuk ◽  
Alexander V. Rodionov ◽  
Lilit Ghukasyan ◽  
Tatiana E. Samatadze ◽  
...  

Abstract Grasslands in the Arctic tundra undergo irreversible degradation due to climatic changes and also over-exploitation and depletion of scarce resources. Comprehensive investigations of cytogenomic structures of valuable Arctic and sub-Arctic grassland species is essential for clarifying their genetic peculiarities and phylogenetic relationships, and also successful developing new forage grass cultivars with high levels of adaptation, stable productivity and longevity. We performed molecular cytogenetic characterization of insufficiently studied pasture grass species (Poaceae) from related genera representing two neighboring clades: 1) Deschampsia and Holcus; 2) Alopecurus, Arctagrostis and Beckmannia, which are the primary fodder resources in the Arctic tundra.

BMC Genetics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Alexandra V. Amosova ◽  
Svyatoslav A. Zoshchuk ◽  
Alexander V. Rodionov ◽  
Lilit Ghukasyan ◽  
Tatiana E. Samatadze ◽  
...  

Abstract Background Grasslands in the Arctic tundra undergo irreversible degradation due to climatic changes and also over-exploitation and depletion of scarce resources. Comprehensive investigations of cytogenomic structures of valuable Arctic and sub-Arctic grassland species is essential for clarifying their genetic peculiarities and phylogenetic relationships, and also successful developing new forage grass cultivars with high levels of adaptation, stable productivity and longevity. We performed molecular cytogenetic characterization of insufficiently studied pasture grass species (Poaceae) from related genera representing two neighboring clades: 1) Deschampsia and Holcus; 2) Alopecurus, Arctagrostis and Beckmannia, which are the primary fodder resources in the Arctic tundra. Results We constructed the integrated schematic maps of distribution of these species in the northern, central and eastern parts of Eurasia based on the currently available data as only scattered data on their occurrence is currently available. The species karyotypes were examined with the use of DAPI-banding, multicolour FISH with 35S rDNA, 5S rDNA and the (GTT)9 microsatellite motif and also sequential rapid multocolour GISH with genomic DNAs of Deschampsia sukatschewii, Deschampsia flexuosa and Holcus lanatus belonging to one of the studied clades. Cytogenomic structures of the species were specified; peculiarities and common features of their genomes were revealed. Different chromosomal rearrangements were detected in Beckmannia syzigachne, Deschampsia cespitosa and D. flexuosa; B chromosomes with distinct DAPI-bands were observed in karyotypes of D. cespitosa and H. lanatus. Conclusions The peculiarities of distribution patterns of the examined chromosomal markers and also presence of common homologous DNA repeats in karyotypes of the studies species allowed us to verify their relationships. The obtained unique data on distribution areas and cytogenomic structures of the valuable Arctic and sub-Arctic pasture species are important for further genetic and biotechnological studies and also plant breeding progress.


2019 ◽  
Author(s):  
Alexandra V. Amosova ◽  
Svyatoslav A. Zoshchuk ◽  
Alexander V. Rodionov ◽  
Lilit Ghukasyan ◽  
Tatiana E. Samatadze ◽  
...  

Abstract Background Grasslands in the Arctic tundra undergo irreversible degradation due to climatic changes and also over-exploitation and depletion of scarce resources. Comprehensive investigations of cytogenomic structures of valuable Arctic and sub-Arctic grassland species is essential for clarifying their genetic peculiarities and phylogenetic relationships and also successful developing new forage grass cultivars with high levels of adaptation, stable productivity and longevity. We performed molecular cytogenetic characterization of seven insufficiently studied pasture grass species from related genera Alopecurus, Arctagrostis, Beckmannia, Deschampsia and Holcus (Poaceae) which are the primary fodder resources in the Arctic tundra. Results For these species, integrated schematic habitat maps were constructed based on the available data on their distribution in Eurasia. The species karyotypes were examined with the use of DAPI-banding, fluorescence in situ hybridization with 35S rDNA, 5S rDNA and the (GTT)9 microsatellite motif and also sequential rapid genomic in situ hybridization with genomic DNAs of Deschampsia sukatschewii, Holcus lanatus and Deschampsia flexuosa. Cytogenomic structures of the studied species were specified; peculiarities and common features of their genomes were revealed. Different chromosomal rearrangements were detected in Beckmannia syzigachne, Deschampsia cespitosa and D. flexuosa; B chromosomes with distinct DAPI-bands were observed in karyotypes of D. cespitosa and H. lanatus. Conclusions The peculiarities of distribution patterns of the examined chromosomal markers and also presence of common homologous DNA repeats in karyotypes of the studies species allowed us to verify their relationships. The obtained unique data on distribution areas and cytogenomic structures of the valuable Arctic and sub-Arctic pasture species are important for further genetic and biotechnological studies and also plant breeding progress.


Author(s):  
Д.А. Юрченко ◽  
М.Е. Миньженкова ◽  
Е.Л. Дадали ◽  
Н.В. Шилова

Синдром инвертированной дупликации короткого плеча хромосомы 8 со смежной терминальной делециенй (inv dup del(8p), ORPHA 96092) - редкая хромосомная аномалия (ХА) с частотой 1/10000-1/30000 живорожденных. В статье представлены клинические и молекулярно-цитогенетические характеристики двух неродственных пациентов с синдромом inv dup del(8p) и уточнены механизмы формирования хромосомного дисбаланса. Inverted duplication deletion 8p syndrome (inv dup del(8p), ORPHA 96092) is a rare chromosomal abnormality with a frequency of 1:10,000 - 30,000 newborns. Clinical manifestations of this syndrome include mental retardation, facial anomalies, hypoplasia/agenesis of corpus callosum, scoliosis and/or kyphosis, hypotonia, congenital heart defects. The article presents the clinical and molecular cytogenetic characteristics of two patients with inv dup del (8p) syndrome and clarifies the formation mechanisms.


2020 ◽  
pp. 75-99
Author(s):  
O. I. Sumina

One of the thermokarst relief forms is baidzharakh massif — the group of mounds separated by trenches formed as a result of the underground ice-wedge polygonal networks melting (Fig. 1). Study of baidzharakh vegetation took place on the northeast coast of the Taimyr Peninsula (the Pronchishcheva Bay area) and on the New Siberian Islands (the Kotelny Island) in 1973–1974 (Sumina, 1975, 1976, 1977a, b, 1979 et al.). The aim of this paper is to produce the classification of baidzharakh mound and trenches communities according to the Brown-Blanquet approach (Westhoff, Maarel, 1978) and to compare these data with the community types earlier established on domination principle (Sumina, 1975 et al.). The information obtained in the 1970s could be helpful in a comparative assessment of the thermokarst process dynamics over the past 4 decades, as well as for comparing these processes in other regions of the Arctic. Both studied areas are located in the northern part of the arctic tundra subzone. On the Taimyr Peninsula (and in particular in the Pronchishcheva Bay area) the plakor (zonal) communities belong to the ass. Salici polaris–Hylocomietum alaskani Matveyeva 1998. Our relevés of plakor tundra on the Kotelny Island demonstrate similarity with the zonal communities of the northeast coast of the Taimyr Peninsula (Table 2). Relevés of communities of thermokarst mounds were made within their boundaries, the size of ~ 30 m². In trenches sample plots of the same area had rectangular shape according to trench width. Relevés of plakor tundra were made on 5x6 m plots. There were marked: location in relief, moistening, stand physiognomy, nanorelief, the percent of open ground patches and degree of their overgrowing, total plant cover, that of vascular plants, mosses, and lichens (especially — crustose ons), and cover estimates for each species. The shape of thermokarst mounds depends on the stage of thermodenudation processes. Flat polygons about 0.5 m height with vegetation similar to the plakor tundra are formed at the beginning of ice melting (Fig. 3, a), after which the deformation of the mounds (from eroded flat polygon (Fig. 3, b) to eroded conical mound (Fig. 3, c). Such mounds of maximal height up to 5 m are located on the middle part of steep slopes, where thermodenudation is very active. The last stage of mound destruction is slightly convex mound with a lumpy surface and vegetation, typical to snowbed sites at slope foots (Fig. 3, d, and 5). Both on watersheds and on gentle slopes mounds are not completely destroyed; and on such elongated smooth-conical mounds dense meadow-like vegetation is developed (Fig. 6). On the Kotelny Island thermokarst mounds of all described shapes occur, while in the Pronchishcheva Bay area only flat polygons, eroded flat polygons, and elongated smooth-conical mounds are presented. Under the influence of thermodenudation the plakor (zonal) vegetation is being transformed that allows to consider the most of mound and trench communities as the variants of zonal association. On the base of 63 relevés, made in 14 baidzharakh massifs, 2 variants with 7 subvariants of the ass. Salici polaris–Hylocomietum alaskani Matveyeva 1998 were established, as well as 1 variant of the azonal ass. Poo arcticae– Dupontietum fisheri Matveyeva 1994, which combines the vegetation of wet trenches with dense herbmoss cover. A detailed description of each subvariant is done. All these syntaxa are compared with the types of mound and trenh communities established previously by the domination principle (Sumina, 1975, 1976, 1979 et al.) and with Brown-Blanquet’ syntaxa published by other authors. The Brown-Blanquet approach in compare with domination principle, clearly demonstrates the similarity between zonal and baidzharakh massifs vegetation. Diagnostic species of syntaxa of baidzharakh vegetation by other authors (Matveyeva, 1994; Zanokha, 1995; Kholod, 2007, 2014; Telyatnikov et al., 2017) differ from ours. On the one hand, this is due to the fact that all mentioned researchers worked in another areas, and on the other, with different hierarchial levels of syntaxa, which are subassociations (or vicariants) in cited works or variants and subvariants in the our. Communities of mounds as well as of trenches in different regions have unlike species composition, but similar apearance, which depends on the similarity of the life form composition and community pattern, stage of their transformation and environmental factors. This fact is a base to group communities by physiognomy in order to have an opportunity of comparative analysis of baidzharakh vegetation diversity in different regions of the Arctic. In total, 6 such groups for thermokarst mounds and trenches are proposed: “tundra-like” ― vegetation of flat polygonal mounds (or trenches) is similar to the plakor (zonal) communities; “eroded tundra-like” ― tundra-like vegetation is presented as fragments, open ground occupies the main part of flat polygonal mounds; “eroded mounds with nonassociated vegetation” ― eroded mounds of various shapes up to sharp conical with absent vegetation at the top and slopes, sparse pioneer vascular plants on a bare substrate and crustose lichens and chionophilous grasses at foots; “meadow-like” ― herb stands with a participation of tundra dwarf-shrubs, mosses, and lichens on elongated smooth-conical mounds and in moderately moist trenches; “communities in snowbeds” ― thin plant cover formed by small mosses, liverworts, crustose lichens, and sparse vascular plants in snowbed habitats on destroyed slightly convex mounds with a lumpy surface and in trenches; “communities of cotton grass” or others, depending on the dominant species ― in wet trenches where vegetation is similar to the arctic hypnum bogs with dominant hygrophyte graminoids as Eriophorum scheuchzeri, E. polystachion, Dupontia fischeri et al. This sheme according to physiognomic features of thermokarst mound and trench communities, as a simplier way to assess the current dynamic stage of the baidzharakh massifs, may be useful for monitoring the thermodenudation activity in different areas of the Arctic, particularly in connection with observed climate changes (ACIA, 2004) and a possible dramatic “cascade of their environmental consequences” (Fraser et al., 2018).


Crop Science ◽  
2002 ◽  
Vol 42 (3) ◽  
pp. 890 ◽  
Author(s):  
Blair L. Waldron ◽  
Kay H. Asay ◽  
Kevin B. Jensen

The Holocene ◽  
2020 ◽  
Vol 30 (7) ◽  
pp. 1091-1096 ◽  
Author(s):  
Eleanor MB Pereboom ◽  
Richard S Vachula ◽  
Yongsong Huang ◽  
James Russell

Wildfires in the Arctic tundra have become increasingly frequent in recent years and have important implications for tundra ecosystems and for the global carbon cycle. Lake sediment–based records are the primary means of understanding the climatic influences on tundra fires. Sedimentary charcoal has been used to infer climate-driven changes in tundra fire frequency but thus far cannot differentiate characteristics of the vegetation burnt during fire events. In forested ecosystems, charcoal morphologies have been used to distinguish changes in fuel type consumed by wildfires of the past; however, no such approach has been developed for tundra ecosystems. We show experimentally that charcoal morphologies can be used to differentiate graminoid (mean = 6.77; standard deviation (SD) = 0.23) and shrub (mean = 2.42; SD = 1.86) biomass burnt in tundra fire records. This study is a first step needed to construct more nuanced tundra wildfire histories and to understand how wildfire will impact the region as vegetation and fire change in the future.


Author(s):  
Karla Fabiola Yescas-Romo ◽  
Francisco Elizandro Molina-Freaner ◽  
Francisca Ramírez-Godina ◽  
M. Humberto Reyes-Valdés ◽  
Octavio Martínez ◽  
...  

2021 ◽  
Vol 298 ◽  
pp. 198397
Author(s):  
François J. Maclot ◽  
Virginie Debue ◽  
Arnaud G. Blouin ◽  
Núria Fontdevila Pareta ◽  
Lucie Tamisier ◽  
...  

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