scholarly journals A Unet-based Research on the Multi-Output Convolution Neural Network's Ability of Decreasing Mis-identification: Automatic Segmentation of Organs at Risk in Thorax

2020 ◽  
Author(s):  
Jie Zhang ◽  
Yiwei Yang ◽  
Kainan Shao ◽  
Xue Bai ◽  
Min Fang ◽  
...  

Abstract Background To study a multi-output convolution neural network (CNN)’s capability of reducing mis-identification. Material and Methods To guarantee that the CNN’s output number was the only experiment variable, we used Unet as research object. By modifying it into a multi-output (MO) one, we got a MO-Unet and the conventional single-output Unet (SO-Uent) as a comparing object. All images involved in this study were computed tomography (CT) scans coming from 105 patients with thoracic tumor. 3 organs at risk (OARs), i.e. lung, heart and spinal cord, were delineated by experienced radiation oncologists and were used as ground truth. The two models were both trained with 1240 CTs (856 images for learning and 384 images for monitor) and under the same learning settings. They were both tested on other 886 images. Dice and mis-identification pixels’ number(n) were 2 metrics for evaluation. Results MO-Unet and SO-Unet achieved Dice of 0.9400 ± 0.0612 (average ± standard deviation) and 0.9451 ± 0.0618 for lung, 0.9143 ± 0.1119 and 0.9160 ± 0.1071 for heart, 0.8988 ± 0.0657 and 0.9020 ± 0.0624 for spinal cord respectively. The two models’ all average Dices were ≤ 0.005. For the normalized number of cases with n = 0, MO-Unet and SO-Unet had 97.29% and 96.84% for spinal cord, 88.49% and 90.86% for heart, 81.26% and 77.09% for lung respectively. Compared to SO-Unet, the mis-identification cases of MO-Unet mainly felled in the range of small n. Conclusions The Dice results showed that the two models had comparable overlap. The n results suggested that the MO-Unet was better in decreasing mis-identification. Besides, a MO network is light-weighted to implement more delineation under the same computing source. Therefore, a MO network is promising in segmenting OARs and has the potential for a widespread application in China.

2021 ◽  
Vol 104 (2) ◽  
pp. 003685042110201
Author(s):  
Jie Zhang ◽  
Yiwei Yang ◽  
Kainan Shao ◽  
Xue Bai ◽  
Min Fang ◽  
...  

Purpose: To propose a multi-output fully convolutional network (MOFCN) to segment bilateral lung, heart and spinal cord in the planning thoracic computed tomography (CT) slices automatically and simultaneously. Methods: The MOFCN includes two components: one main backbone and three branches. The main backbone extracts the features about lung, heart and spinal cord. The extracted features are transferred to three branches which correspond to three organs respectively. The longest branch to segment spinal cord is nine layers, including input and output layers. The MOFCN was evaluated on 19,277 CT slices from 966 patients with cancer in the thorax. In these slices, the organs at risk (OARs) were delineated and validated by experienced radiation oncologists, and served as ground truth for training and evaluation. The data from 61 randomly chosen patients were used for training and validation. The remaining 905 patients’ slices were used for testing. The metric used to evaluate the similarity between the auto-segmented organs and their ground truth was Dice. Besides, we compared the MOFCN with other published models. To assess the distinct output design and the impact of layer number and dilated convolution, we compared MOFCN with a multi-label learning model and its variants. By analyzing the not good performances, we suggested possible solutions. Results: MOFCN achieved Dice of 0.95  ±  0.02 for lung, 0.91  ±  0.03 for heart and 0.87  ±  0.06 for spinal cord. Compared to other models, MOFCN could achieve a comparable accuracy with the least time cost. Conclusion: The results demonstrated the MOFCN’s effectiveness. It uses less parameters to delineate three OARs simultaneously and automatically, and thus shows a relatively low requirement for hardware and has potential for broad application.


2019 ◽  
Vol 46 (5) ◽  
pp. 2204-2213 ◽  
Author(s):  
Jason W. Chan ◽  
Vasant Kearney ◽  
Samuel Haaf ◽  
Susan Wu ◽  
Madeleine Bogdanov ◽  
...  

Author(s):  
Liang Kim Meng ◽  
Azira Khalil ◽  
Muhamad Hanif Ahmad Nizar ◽  
Maryam Kamarun Nisham ◽  
Belinda Pingguan-Murphy ◽  
...  

Background: Bone Age Assessment (BAA) refers to a clinical procedure that aims to identify a discrepancy between biological and chronological age of an individual by assessing the bone age growth. Currently, there are two main methods of executing BAA which are known as Greulich-Pyle and Tanner-Whitehouse techniques. Both techniques involve a manual and qualitative assessment of hand and wrist radiographs, resulting in intra and inter-operator variability accuracy and time-consuming. An automatic segmentation can be applied to the radiographs, providing the physician with more accurate delineation of the carpal bone and accurate quantitative analysis. Methods: In this study, we proposed an image feature extraction technique based on image segmentation with the fully convolutional neural network with eight stride pixel (FCN-8). A total of 290 radiographic images including both female and the male subject of age ranging from 0 to 18 were manually segmented and trained using FCN-8. Results and Conclusion: The results exhibit a high training accuracy value of 99.68% and a loss rate of 0.008619 for 50 epochs of training. The experiments compared 58 images against the gold standard ground truth images. The accuracy of our fully automated segmentation technique is 0.78 ± 0.06, 1.56 ±0.30 mm and 98.02% in terms of Dice Coefficient, Hausdorff Distance, and overall qualitative carpal recognition accuracy, respectively.


2006 ◽  
Vol 13 (3) ◽  
pp. 108-115 ◽  
Author(s):  
O. Ballivy ◽  
W. Parker ◽  
T. Vuong ◽  
G. Shenouda ◽  
H. Patrocinio

We assessed the effect of geometric uncertainties on target coverage and on dose to the organs at risk (OARS) during intensity-modulated radiotherapy (IMRT) for head-and-neck cancer, and we estimated the required margins for the planning target volume (PTV) and the planning organ-at-risk volume (PRV). For eight headand- neck cancer patients, we generated IMRT plans with localization uncertainty margins of 0 mm, 2.5 mm, and 5.0 mm. The beam intensities were then applied on repeat computed tomography (CT) scans obtained weekly during treatment, and dose distributions were recalculated. The dose–volume histogram analysis for the repeat CT scans showed that target coverage was adequate (V100 ≥ 95%) for only 12.5% of the gross tumour volumes, 54.3% of the upper-neck clinical target volumes (CTVS), and 27.4% of the lower-neck CTVS when no margins were added for PTV. The use of 2.5-mm and 5.0-mm margins significantly improved target coverage, but the mean dose to the contralateral parotid increased from 25.9 Gy to 29.2 Gy. Maximum dose to the spinal cord was above limit in 57.7%, 34.6%, and 15.4% of cases when 0-mm, 2.5-mm, and 5.0-mm margins (respectively) were used for PRV. Significant deviations from the prescribed dose can occur during IMRT treatment delivery for headand- neck cancer. The use of 2.5-mm to 5.0-mm margins for PTV and PRV greatly reduces the risk of underdosing targets and of overdosing the spinal cord.


2004 ◽  
Vol 18 (1) ◽  
pp. 131-160 ◽  
Author(s):  
Maria Werner-Wasik ◽  
Xiaoli Yu ◽  
Lawrence B Marks ◽  
Timothy E Schultheiss

Sign in / Sign up

Export Citation Format

Share Document