scholarly journals Isomerization of an enzyme-coenzyme complex in yeast alcohol dehydrogenase-catalysed reactions

2003 ◽  
Vol 68 (2) ◽  
pp. 77-84 ◽  
Author(s):  
Vladimir Leskovac ◽  
Svetlana Trivic ◽  
Draginja Pericin
Keyword(s):  
Alcohol Dehydrogenase ◽  
Rate Constants ◽  
Equilibrium Constants ◽  
Kinetic Mechanism ◽  
Yeast Alcohol Dehydrogenase ◽  
Catalyzed Reactions ◽  
The Individual ◽  
Individual Rate ◽  
Catalyzed Oxidation

In this work, all the rate constants in the kinetic mechanism of the yeast alcohol dehydrogenase-catalyzed oxidation of ethanol by NAD+, at pH 7.0, 25 ?C, have been estimated. The determination of the individual rate constants was achieved by fitting the reaction progress curves to the experimental data, using the procedures of the FITSIM and KINSIM software package of Carl Frieden. This work is the first report in the literature showing the internal equilibrium constants for the isomerization of the enzyme-NAD+ complex in yeast alcohol dehydrogenase-catalyzed reactions.

scholarly journals The linkage between binding of the C-terminal domain of hirudin and amidase activity in human α-thrombin

1993 ◽  
Vol 289 (2) ◽  
pp. 475-480 ◽  
Author(s):  
R de Cristofaro ◽  
B Rocca ◽  
B Bizzi ◽  
R Landolfi
Keyword(s):  
Rate Constants ◽  
Binding Constant ◽  
Amidase Activity ◽  
Equilibrium Binding ◽  
Viscosity Effects ◽  
The Individual ◽  
Individual Rate ◽  
Hydrolysis Of ◽  
Equilibrium Binding Constant

A method derived from the analysis of viscosity effects on the hydrolysis of the amide substrates D-phenylalanylpipecolyl-arginine-p-nitroaniline, tosylglycylprolylarginine-p-nitroanaline and cyclohexylglycylalanylarginine-p-nitroalanine by human alpha-thrombin was developed to dissect the Michaelis-Menten parameters Km and kcat into the individual rate constants of the binding, acylation and deacylation reactions. This method was used to analyse the effect of the C-terminal hirudin (residues 54-65) [hir-(54-65)] domain on the binding and hydrolysis of the three substrates. The results showed that the C-terminal hir-(54-65) fragment affects only the acylation rate, which is increased approx. 1.2-fold for all the substrates. Analysis of the dependence of acylation rate constants on hirudin-fragment concentration, allowed the determination of the equilibrium binding constant of C-terminal hir-(54-65) (Kd approximately 0.7 microM). In addition this peptide was found to competitively inhibit thrombin-fibrinogen interaction with a Ki which is in excellent agreement with the equilibrium constant derived from viscosity experiments. These results demonstrate that binding of hir-(54-65) to the fibrinogen recognition site of thrombin does not affect the equilibrium binding of amide substrates, but induces only a small increase in the acylation rate of the hydrolysis reaction.

The determination of the individual rate constants of polyethylene (PE) chlorination

1971 ◽  
Vol 13 (11) ◽  
pp. 2798-2805 ◽  
Author(s):  
L.B. Krentsel' ◽  
A.D. Litmanovich ◽  
I.V. Pastukhova ◽  
V.A. Agasandyan
Keyword(s):  
Rate Constants ◽  
The Individual ◽  
Individual Rate

scholarly journals Binding of coenzymes to yeast alcohol dehydrogenase

2010 ◽  
Vol 75 (2) ◽  
pp. 185-194 ◽  
Author(s):  
Vladimir Leskovac ◽  
Svetlana Trivic ◽  
Draginja Pericin ◽  
Mira Popovic ◽  
Julijan Kandrac
Keyword(s):  
Alcohol Dehydrogenase ◽  
Equilibrium Constants ◽  
Point Mutations ◽  
Free Energies ◽  
Wild Type ◽  
Wild Type Enzyme ◽  
Mutant Type ◽  
Yeast Alcohol Dehydrogenase ◽  
Internal Equilibrium ◽  
Individual Reaction

In this work, the binding of coenzymes to yeast alcohol dehydrogenase (EC 1.1.1.1) were investigated. The main criterions were the change in the standard free energies for individual reaction steps, the internal equilibrium constants and the overall changes in the reaction free energies. The calculations were performed for the wild type enzyme at pH 6-9 and for 15 different mutant type enzymes, with single or double point mutations, at pH 7.3. The abundance of theoretical and experimental data enabled the binding of coenzymes to enzyme to be assessed in depth.

The retroaldol reaction of 3-methyl-2-butenal

1983 ◽  
Vol 61 (1) ◽  
pp. 171-178 ◽  
Author(s):  
J. Peter Guthrie ◽  
Brian A. Dawson
Keyword(s):  
Sodium Hydroxide ◽  
Equilibrium Constant ◽  
Rate Constants ◽  
Equilibrium Constants ◽  
Aqueous Sodium Hydroxide ◽  
Initial Increase ◽  
Aqueous Sodium ◽  
Rate Determining Step ◽  
Kinetics Of

In aqueous sodium hydroxide solutions at 25 °C, 3-methyl-2-butenal, 1c, undergoes retroaldol cleavage to acetone and acetaldehyde. The kinetics of the retroaldol reaction were followed spectrophotometrically at 242 nm and showed simple first order behavior. When 3-methyl-3-hydroxybutanal, 2c, was added to aqueous sodium hydroxide solutions at 25 °C, there was an initial increase in absorbance at 242 nm, attributed to formation of 1c, followed by a 20-fold slower decrease; the rate of the slow decrease matches the rate of disappearance of 1c under the same conditions. Analysis of the kinetics allows determination of the three rate constants needed to describe the system: khyd = 0.00342; kdehyd = 0.00832; kretro = 0.0564; all M−1 s−1. The equilibrium constant for enone hydration is 0.41. Rate constants for the analogous reactions for acrolein and crotonaldehyde could be obtained from the literature. There is a reasonable rate–equilibrium correlation for the retroaldol step. For the enone hydration step, rate and equilibrium constants respond differently to replacement of hydrogen by methyl. It is proposed that this results from release of strain after the rate-determining step by rotation about a single bond; this decrease in strain is reflected in the equilibrium constant but not in the rate constant.

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