scholarly journals Molecular Design of Synthetic Benzimidazoles for the Switchover of the Duplex to G-quadruplex DNA Recognition

2013 ◽  
Vol 67 (1) ◽  
pp. 39-43 ◽  
Author(s):  
Basudeb Maji ◽  
Santanu Bhattacharya
2019 ◽  
Vol 47 (18) ◽  
pp. 9950-9966 ◽  
Author(s):  
Jussara Amato ◽  
Linda Cerofolini ◽  
Diego Brancaccio ◽  
Stefano Giuntini ◽  
Nunzia Iaccarino ◽  
...  

Abstract HMGB1 is a ubiquitous non-histone protein, which biological effects depend on its expression and subcellular location. Inside the nucleus, HMGB1 is engaged in many DNA events such as DNA repair, transcription and telomere maintenance. HMGB1 has been reported to bind preferentially to bent DNA as well as to noncanonical DNA structures like 4-way junctions and, more recently, to G-quadruplexes. These are four-stranded conformations of nucleic acids involved in important cellular processes, including telomere maintenance. In this frame, G-quadruplex recognition by specific proteins represents a key event to modulate physiological or pathological pathways. Herein, to get insights into the telomeric G-quadruplex DNA recognition by HMGB1, we performed detailed biophysical studies complemented with biological analyses. The obtained results provided information about the molecular determinants for the interaction and showed that the structural variability of human telomeric G-quadruplex DNA may have significant implications in HMGB1 recognition. The biological data identified HMGB1 as a telomere-associated protein in both telomerase-positive and -negative tumor cells and showed that HMGB1 gene silencing in such cells induces telomere DNA damage foci. Altogether, these findings provide a deeper understanding of telomeric G-quadruplex recognition by HMGB1 and suggest that this protein could actually represent a new target for cancer therapy.


Molecules ◽  
2013 ◽  
Vol 18 (11) ◽  
pp. 13588-13607 ◽  
Author(s):  
Rupesh Nanjunda ◽  
Eric Owens ◽  
Leah Mickelson ◽  
Tyler Dost ◽  
Ekaterina Stroeva ◽  
...  

2013 ◽  
Vol 49 (18) ◽  
pp. 1817 ◽  
Author(s):  
Sudipta Bhowmik ◽  
Rabindra Nath Das ◽  
Bibudha Parasar ◽  
Jyotirmayee Dash

2019 ◽  
Vol 48 (32) ◽  
pp. 12040-12049 ◽  
Author(s):  
Laura A. Hager ◽  
Stephan Mokesch ◽  
Claudia Kieler ◽  
Silvia Alonso-de Castro ◽  
Dina Baier ◽  
...  

Ru(ii) arene complexes with 1,3-dioxoindan-2-carboxamides ligands bearing pendant naphthyl-groups designed to bind G-quadruplex DNA structures by both stacking and coordinating interactions.


2010 ◽  
Vol 2010 ◽  
pp. 1-19 ◽  
Author(s):  
David Monchaud ◽  
Anton Granzhan ◽  
Nicolas Saettel ◽  
Aurore Guédin ◽  
Jean-Louis Mergny ◽  
...  

Macrocyclic scaffolds are particularly attractive for designing selective G-quadruplex ligands essentially because, on one hand, they show a poor affinity for the “standard” B-DNA conformation and, on the other hand, they fit nicely with the external G-quartets of quadruplexes. Stimulated by the pioneering studies on the cationic porphyrin TMPyP4 and the natural product telomestatin, follow-up studies have developed, rapidly leading to a large diversity of macrocyclic structures with remarkable-quadruplex binding properties and biological activities. In this review we summarize the current state of the art in detailing the three main categories of quadruplex-binding macrocycles described so far (telomestatin-like polyheteroarenes, porphyrins and derivatives, polyammonium cyclophanes), and in addressing both synthetic issues and biological aspects.


2017 ◽  
Vol 292 (23) ◽  
pp. 9567-9582 ◽  
Author(s):  
Wezley C. Griffin ◽  
Jun Gao ◽  
Alicia K. Byrd ◽  
Shubeena Chib ◽  
Kevin D. Raney

2014 ◽  
Vol 1840 (6) ◽  
pp. 2050-2059 ◽  
Author(s):  
Pasqualina Liana Scognamiglio ◽  
Concetta Di Natale ◽  
Marilisa Leone ◽  
Mattia Poletto ◽  
Luigi Vitagliano ◽  
...  

Langmuir ◽  
2018 ◽  
Vol 34 (43) ◽  
pp. 13057-13064 ◽  
Author(s):  
E. Prado ◽  
L. Bonnat ◽  
H. Bonnet ◽  
T. Lavergne ◽  
A. Van der Heyden ◽  
...  

2020 ◽  
Vol 27 (1) ◽  
pp. 154-169 ◽  
Author(s):  
Claudiu N. Lungu ◽  
Bogdan Ionel Bratanovici ◽  
Maria Mirabela Grigore ◽  
Vasilichia Antoci ◽  
Ionel I. Mangalagiu

Lack of specificity and subsequent therapeutic effectiveness of antimicrobial and antitumoral drugs is a common difficulty in therapy. The aim of this study is to investigate, both by experimental and computational methods, the antitumoral and antimicrobial properties of a series of synthesized imidazole-pyridine derivatives. Interaction with three targets was discussed: Dickerson-Drew dodecamer (PDB id 2ADU), G-quadruplex DNA string (PDB id 2F8U) and DNA strain in complex with dioxygenase (PDB id 3S5A). Docking energies were computed and represented graphically. On them, a QSAR model was developed in order to further investigate the structure-activity relationship. Results showed that synthesized compounds have antitumoral and antimicrobial properties. Computational results agreed with the experimental data.


2017 ◽  
Vol 22 (44) ◽  
pp. 6612-6624 ◽  
Author(s):  
Graziella Cimino-Reale ◽  
Nadia Zaffaroni ◽  
Marco Folini

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