scholarly journals The Influence of Let-7b-5p Target Gene in Cholangiocarcinoma and its Bioinformatic Analysis

2021 ◽  
Vol 5 (2) ◽  
Author(s):  
Xibing Zhang ◽  
Jianghua Ran ◽  
Fang Liu ◽  
Yingpeng Zhao ◽  
Zongqiang Hu

Objective: To analyze the biological functions and its clinical significance of let-7b-5p target gene in cholangiocarcinoma utilizing bioinformatics. Methods: The paper focuses on the let-7b-5p target gene, and predicts its biological functions as well as related signal pathways through GO biological function and KEGG signal pathway enrichment analysis. The STRING database and Cytoscape are used to construct a protein-protein interaction network to screen core genes. Results: The results of GO analysis showed that let-7b-5p target gene was mainly enriched in biological processes such as Small GTPase binding, Rho GTPase binding, and Rac GTPase binding. The results of KEGG analysis showed that let-7b-5p target gene was significantly enriched in key signaling pathways including Focal adhesion and ECM-receptor interaction. Through protein-protein interaction network and module analysis, CXCL8 and SDC2 were screened as the core site. Conclusion: let-7b-5p can participate in the regulation of biological functions of tumor cells in cholangiocarcinoma, suggesting that it may play an important role as a tumor suppressor gene and biomarker in the occurrence and development of cholangiocarcinoma, which provides new ideas for its diagnosis and treatment.

2021 ◽  
Author(s):  
Backiyarani Suthanthiram ◽  
Sasikala Rajendran ◽  
Sharmiladevi Simeon ◽  
Uma Subbaraya

Abstract Banana, one of the most important staple, delicious fruit among global consumers is highly sterile owing to natural parthenocarpy. Identification of genetic factors responsible for parthenocarpy would facilitate the conventional breeders to improve the seeded accessions. We have constructed Protein-protein interaction (PPI) network through mining differentially expressed genes and the genes used for transgenic studies with respect to parthenocarpy. Based on the topological and pathway enrichment analysis of proteins in PPI network, 12 candidate genes were shortlisted. By exploring the PPI of candidate genes from the putative network, we postulated a putative pathway that bring insights into the significance of cytokinin mediated CLV-WUSHEL signaling pathway in addition to gibberellin mediated auxin signaling pathway in parthenocarpy. Further validation of candidate genes in seeded and seedless accession of Musa spp using qRT-PCR put forward AGL8, MADS16, IAA (GH3.8), RGA1, EXPA1, GID1C, HK2 and BAM1 as possible target genes in natural parthenocarpy. In contrary, expression profile of ACLB-2 and ZEP is anticipated to highlight the difference in artificially induced and natural parthenocarpy. Our analysis is the first attempt to identify candidate genes and to hypothesize a putative mechanism that bridges the gaps in understanding natural parthenocarpy through protein-protein interaction network.


2017 ◽  
Vol 8 (Suppl 1) ◽  
pp. S20-S21 ◽  
Author(s):  
Akram Safaei ◽  
Mostafa Rezaei Tavirani ◽  
Mona Zamanian Azodi ◽  
Alireza Lashay ◽  
Seyed Farzad Mohammadi ◽  
...  

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