scholarly journals Evaluating Word Similarity Measure of Embeddings Through Binary Classification

2019 ◽  
Vol 1 (3) ◽  
Author(s):  
A. Aziz Altowayan ◽  
Lixin Tao
Keyword(s):  
Similarity Measure ◽  
Binary Classification ◽  
General Purpose ◽  
Feature Representation ◽  
Entity Recognition ◽  
Language Models ◽  
Data Set ◽  
Word Similarity ◽  
Domain Specific ◽  
Retrieval Rate

We consider the following problem: given neural language models (embeddings) each of which is trained on an unknown data set, how can we determine which model would provide a better result when used for feature representation in a downstream task such as text classification or entity recognition? In this paper, we assess the word similarity measure through analyzing its impact on word embeddings learned from various datasets and how they perform in a simple classification task. Word representations were learned and assessed under the same conditions. For training word vectors, we used the implementation of Continuous Bag of Words described in [1]. To assess the quality of the vectors, we applied the analogy questions test for word similarity described in the same paper. Further, to measure the retrieval rate of an embedding model, we introduced a new metric (Average Retrieval Error) which measures the percentage of missing words in the model. We observe that scoring a high accuracy of syntactic and semantic similarities between word pairs is not an indicator of better classification results. This observation can be justified by the fact that a domain-specific corpus contributes to the performance better than a general-purpose corpus. For reproducibility, we release our experiments scripts and results.

scholarly journals Annotating Entities with Fine-Grained Types in Austrian Court Decisions

2021 ◽  
Author(s):  
Artem Revenko ◽  
Anna Breit ◽  
Victor Mireles ◽  
Julian Moreno-Schneider ◽  
Christian Sageder ◽  
...  
Keyword(s):  
Binary Classification ◽  
Named Entity Recognition ◽  
General Purpose ◽  
Training Data ◽  
Entity Recognition ◽  
Court Decisions ◽  
Data Set ◽  
Domain Experts ◽  
Fine Grained ◽  
Named Entity

The usage of Named Entity Recognition tools on domain-specific corpora is often hampered by insufficient training data. We investigate an approach to produce fine-grained named entity annotations of a large corpus of Austrian court decisions from a small manually annotated training data set. We apply a general purpose Named Entity Recognition model to produce annotations of common coarse-grained types. Next, a small sample of these annotations are manually inspected by domain experts to produce an initial fine-grained training data set. To efficiently use the small manually annotated data set we formulate the task of named entity typing as a binary classification task – for each originally annotated occurrence of an entity, and for each fine-grained type we verify if the entity belongs to it. For this purpose we train a transformer-based classifier. We randomly sample 547 predictions and evaluate them manually. The incorrect predictions are used to improve the performance of the classifier – the corrected annotations are added to the training set. The experiments show that re-training with even a very small number (5 or 10) of originally incorrect predictions can significantly improve the classifier performance. We finally train the classifier on all available data and re-annotate the whole data set.

scholarly journals MenuNER: Domain-Adapted BERT Based NER Approach for a Domain with Limited Dataset and Its Application to Food Menu Domain

2021 ◽  
Vol 11 (13) ◽  
pp. 6007
Author(s):  
Muzamil Hussain Syed ◽  
Sun-Tae Chung
Keyword(s):  
Domain Adaptation ◽  
Language Model ◽  
Named Entity Recognition ◽  
Word Embedding ◽  
Fine Tuning ◽  
Entity Recognition ◽  
Language Models ◽  
Feature Vectors ◽  
Named Entity ◽  
Domain Specific

Entity-based information extraction is one of the main applications of Natural Language Processing (NLP). Recently, deep transfer-learning utilizing contextualized word embedding from pre-trained language models has shown remarkable results for many NLP tasks, including Named-entity recognition (NER). BERT (Bidirectional Encoder Representations from Transformers) is gaining prominent attention among various contextualized word embedding models as a state-of-the-art pre-trained language model. It is quite expensive to train a BERT model from scratch for a new application domain since it needs a huge dataset and enormous computing time. In this paper, we focus on menu entity extraction from online user reviews for the restaurant and propose a simple but effective approach for NER task on a new domain where a large dataset is rarely available or difficult to prepare, such as food menu domain, based on domain adaptation technique for word embedding and fine-tuning the popular NER task network model ‘Bi-LSTM+CRF’ with extended feature vectors. The proposed NER approach (named as ‘MenuNER’) consists of two step-processes: (1) Domain adaptation for target domain; further pre-training of the off-the-shelf BERT language model (BERT-base) in semi-supervised fashion on a domain-specific dataset, and (2) Supervised fine-tuning the popular Bi-LSTM+CRF network for downstream task with extended feature vectors obtained by concatenating word embedding from the domain-adapted pre-trained BERT model from the first step, character embedding and POS tag feature information. Experimental results on handcrafted food menu corpus from customers’ review dataset show that our proposed approach for domain-specific NER task, that is: food menu named-entity recognition, performs significantly better than the one based on the baseline off-the-shelf BERT-base model. The proposed approach achieves 92.5% F1 score on the YELP dataset for the MenuNER task.

scholarly journals An Evaluation of State-of-the-Art Approaches to Relation Extraction for Usage on Domain-Specific Corpora

2021 ◽  
Author(s):  
Christoph Brandl ◽  
Jens Albrecht ◽  
Renato Budinich
Keyword(s):  
State Of The Art ◽  
Extraction Procedure ◽  
Named Entity Recognition ◽  
Relation Extraction ◽  
Building Blocks ◽  
Training Data ◽  
Entity Recognition ◽  
Data Set ◽  
Named Entity ◽  
Domain Specific

The task of relation extraction aims at classifying the semantic relations between entities in a text. When coupled with named-entity recognition these can be used as the building blocks for an information extraction procedure that results in the construction of a Knowledge Graph. While many NLP libraries support named-entity recognition, there is no off-the-shelf solution for relation extraction. In this paper, we evaluate and compare several state-of-the-art approaches on a subset of the FewRel data set as well as a manually annotated corpus. The custom corpus contains six relations from the area of market research and is available for public use. Our approach provides guidance for the selection of models and training data for relation extraction in realworld projects.

scholarly journals Medical Named Entity Recognition from Un-labelled Medical Records based on Pre-trained Language Models and Domain Dictionary

2021 ◽  
pp. 1-13
Author(s):  
Chaojie Wen ◽  
Tao Chen ◽  
Xudong Jia ◽  
Jiang Zhu
Keyword(s):  
Medical Records ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Language Models ◽  
Medical Texts ◽  
Named Entities ◽  
Named Entity ◽  
Domain Specific ◽  
Medical Entity ◽  
Medical Documents

Abstract Medical named entity recognition (NER) is an area in which medical named entities are recognized from medical texts, such as diseases, drugs, surgery reports, anatomical parts, examination documents, and so on. Conventional medical NER methods do not make full use of un-labelled medical texts embedded in medical documents. To address this issue, we propose a medical NER approach based on pre-trained language models and a domain dictionary. First, we construct a medical entity dictionary by extracting medical entities from labelled medical texts and collecting medical entities from other resources, such as the Yidu-N4K dataset. Second, we employ this dictionary to train domain-specific pre-trained language models using un-labelled medical texts. Third, we employ a pseudo labelling mechanism in un-labelled medical texts to automatically annotate texts and create pseudo labels. Fourth, the BiLSTM-CRF sequence tagging model is used to fine-tune the pre-trained language models. Our experiments on the un-labelled medical texts, which are extracted from Chinese electronic medical records, show that the proposed NER approach enables the strict and relaxed F1 scores to be 88.7% and 95.3%, respectively.

scholarly journals Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing

2022 ◽  
Vol 3 (1) ◽  
pp. 1-23
Author(s):  
Yu Gu ◽  
Robert Tinn ◽  
Hao Cheng ◽  
Michael Lucas ◽  
Naoto Usuyama ◽  
...  
Keyword(s):  
Natural Language Processing ◽  
Natural Language ◽  
Language Processing ◽  
State Of The Art ◽  
Fine Tuning ◽  
Entity Recognition ◽  
Language Models ◽  
General Domain ◽  
Domain Specific ◽  
And Task

Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing assumption is that even domain-specific pretraining can benefit by starting from general-domain language models. In this article, we challenge this assumption by showing that for domains with abundant unlabeled text, such as biomedicine, pretraining language models from scratch results in substantial gains over continual pretraining of general-domain language models. To facilitate this investigation, we compile a comprehensive biomedical NLP benchmark from publicly available datasets. Our experiments show that domain-specific pretraining serves as a solid foundation for a wide range of biomedical NLP tasks, leading to new state-of-the-art results across the board. Further, in conducting a thorough evaluation of modeling choices, both for pretraining and task-specific fine-tuning, we discover that some common practices are unnecessary with BERT models, such as using complex tagging schemes in named entity recognition. To help accelerate research in biomedical NLP, we have released our state-of-the-art pretrained and task-specific models for the community, and created a leaderboard featuring our BLURB benchmark (short for Biomedical Language Understanding & Reasoning Benchmark) at https://aka.ms/BLURB .

Developing a RadLex-based Named Entity Recognition Tool for Mining Textual Radiology Reports (Preprint)

2020 ◽  
Author(s):  
Shintaro Tsuji ◽  
Andrew Wen ◽  
Naoki Takahashi ◽  
Hongjian Zhang ◽  
Katsuhiko Ogasawara ◽  
...  
Keyword(s):  
Named Entity Recognition ◽  
Noun Phrases ◽  
General Purpose ◽  
Entity Recognition ◽  
Free Text ◽  
Clinical Text ◽  
Named Entity ◽  
Radiology Reports ◽  
Two Measures ◽  
F Measure

BACKGROUND Named entity recognition (NER) plays an important role in extracting the features of descriptions for mining free-text radiology reports. However, the performance of existing NER tools is limited because the number of entities depends on its dictionary lookup. Especially, the recognition of compound terms is very complicated because there are a variety of patterns. OBJECTIVE The objective of the study is to develop and evaluate a NER tool concerned with compound terms using the RadLex for mining free-text radiology reports. METHODS We leveraged the clinical Text Analysis and Knowledge Extraction System (cTAKES) to develop customized pipelines using both RadLex and SentiWordNet (a general-purpose dictionary, GPD). We manually annotated 400 of radiology reports for compound terms (Cts) in noun phrases and used them as the gold standard for the performance evaluation (precision, recall, and F-measure). Additionally, we also created a compound-term-enhanced dictionary (CtED) by analyzing false negatives (FNs) and false positives (FPs), and applied it for another 100 radiology reports for validation. We also evaluated the stem terms of compound terms, through defining two measures: an occurrence ratio (OR) and a matching ratio (MR). RESULTS The F-measure of the cTAKES+RadLex+GPD was 32.2% (Precision 92.1%, Recall 19.6%) and that of combined the CtED was 67.1% (Precision 98.1%, Recall 51.0%). The OR indicated that stem terms of “effusion”, "node", "tube", and "disease" were used frequently, but it still lacks capturing Cts. The MR showed that 71.9% of stem terms matched with that of ontologies and RadLex improved about 22% of the MR from the cTAKES default dictionary. The OR and MR revealed that the characteristics of stem terms would have the potential to help generate synonymous phrases using ontologies. CONCLUSIONS We developed a RadLex-based customized pipeline for parsing radiology reports and demonstrated that CtED and stem term analysis has the potential to improve dictionary-based NER performance toward expanding vocabularies.

Automatic construction of academic profile: A case of information science domain

2021 ◽  
pp. 016555152199804
Author(s):  
Qian Geng ◽  
Ziang Chuai ◽  
Jian Jin
Keyword(s):  
Information Science ◽  
Binary Classification ◽  
Learning To Rank ◽  
Semantic Distance ◽  
Background Information ◽  
Training Dataset ◽  
Initial Vector ◽  
Specific Domain ◽  
Adaboost Algorithm ◽  
Domain Specific

To provide junior researchers with domain-specific concepts efficiently, an automatic approach for academic profiling is needed. First, to obtain personal records of a given scholar, typical supervised approaches often utilise structured data like infobox in Wikipedia as training dataset, but it may lead to a severe mis-labelling problem when they are utilised to train a model directly. To address this problem, a new relation embedding method is proposed for fine-grained entity typing, in which the initial vector of entities and a new penalty scheme are considered, based on the semantic distance of entities and relations. Also, to highlight critical concepts relevant to renowned scholars, scholars’ selective bibliographies which contain massive academic terms are analysed by a newly proposed extraction method based on logistic regression, AdaBoost algorithm and learning-to-rank techniques. It bridges the gap that conventional supervised methods only return binary classification results and fail to help researchers understand the relative importance of selected concepts. Categories of experiments on academic profiling and corresponding benchmark datasets demonstrate that proposed approaches outperform existing methods notably. The proposed techniques provide an automatic way for junior researchers to obtain organised knowledge in a specific domain, including scholars’ background information and domain-specific concepts.

Towards corpus and model: Hierarchical structured-attention-based features for Indonesian named entity recognition

2021 ◽  
pp. 1-12
Author(s):  
Yingwen Fu ◽  
Nankai Lin ◽  
Xiaotian Lin ◽  
Shengyi Jiang
Keyword(s):  
Language Processing ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Language Models ◽  
Neural Models ◽  
Performance Models ◽  
Named Entity ◽  
High Resource ◽  
Benchmark Datasets

Named entity recognition (NER) is fundamental to natural language processing (NLP). Most state-of-the-art researches on NER are based on pre-trained language models (PLMs) or classic neural models. However, these researches are mainly oriented to high-resource languages such as English. While for Indonesian, related resources (both in dataset and technology) are not yet well-developed. Besides, affix is an important word composition for Indonesian language, indicating the essentiality of character and token features for token-wise Indonesian NLP tasks. However, features extracted by currently top-performance models are insufficient. Aiming at Indonesian NER task, in this paper, we build an Indonesian NER dataset (IDNER) comprising over 50 thousand sentences (over 670 thousand tokens) to alleviate the shortage of labeled resources in Indonesian. Furthermore, we construct a hierarchical structured-attention-based model (HSA) for Indonesian NER to extract sequence features from different perspectives. Specifically, we use an enhanced convolutional structure as well as an enhanced attention structure to extract deeper features from characters and tokens. Experimental results show that HSA establishes competitive performance on IDNER and three benchmark datasets.

scholarly journals Text Mining of Hazard and Operability Analysis Reports Based on Active Learning

Processes ◽  
2021 ◽  
Vol 9 (7) ◽  
pp. 1178
Author(s):  
Zhenhua Wang ◽  
Beike Zhang ◽  
Dong Gao
Keyword(s):  
Active Learning ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Chemical System ◽  
Chemical Safety ◽  
High Quality ◽  
Data Set ◽  
Final Model ◽  
Named Entity ◽  
Sampling Algorithms

In the field of chemical safety, a named entity recognition (NER) model based on deep learning can mine valuable information from hazard and operability analysis (HAZOP) text, which can guide experts to carry out a new round of HAZOP analysis, help practitioners optimize the hidden dangers in the system, and be of great significance to improve the safety of the whole chemical system. However, due to the standardization and professionalism of chemical safety analysis text, it is difficult to improve the performance of traditional models. To solve this problem, in this study, an improved method based on active learning is proposed, and three novel sampling algorithms are designed, Variation of Token Entropy (VTE), HAZOP Confusion Entropy (HCE) and Amplification of Least Confidence (ALC), which improve the ability of the model to understand HAZOP text. In this method, a part of data is used to establish the initial model. The sampling algorithm is then used to select high-quality samples from the data set. Finally, these high-quality samples are used to retrain the whole model to obtain the final model. The experimental results show that the performance of the VTE, HCE, and ALC algorithms are better than that of random sampling algorithms. In addition, compared with other methods, the performance of the traditional model is improved effectively by the method proposed in this paper, which proves that the method is reliable and advanced.

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