scholarly journals Phylogenetic analysis ofPythium insidiosumThai strains using cytochrome oxidase II (COXII) DNA coding sequences and internal transcribed spacer regions (ITS)

2011 ◽  
Vol 49 (3) ◽  
pp. 289-295 ◽  
Author(s):  
Patcharee Kammarnjesadakul ◽  
Tanapat Palaga ◽  
Kallaya Sritunyalucksana ◽  
Leonel Mendoza ◽  
Theerapong Krajaejun ◽  
...  
Phytotaxa ◽  
2020 ◽  
Vol 453 (3) ◽  
pp. 157-178
Author(s):  
DARIN S. PENNEYS ◽  
FRANK ALMEDA ◽  
FABIAN A. MICHELANGELI ◽  
RENATO GOLDENBERG ◽  
ANGELA B. MARTINS ◽  
...  

Several genera in the Melastomataceae mostly endemic to southeastern Brazil have not been assessed for their tribal placement in a phylogenetic context. Most workers have placed the monotypic diminutive herb Lithobium in the Microlicieae, but some classifications have assigned it to either the Sonerileae or Bertolonieae. Another monotypic genus, Eriocnema, has been included in the Bertolonieae, Sonerileae, or Microlicieae. Physeterostemon contains five species, and has not previously been assigned to any tribe. Ochthephilus, a monotypic genus endemic to Guyana, was assigned to the Merianieae, but lack of fruit and seed data, and a paucity of collections, have impeded phylogenetic assessment. To assess the placement of these genera, we conducted a phylogenetic analysis of 91 species representing 73 genera from across the Melastomataceae, including 24 of the 27 putative close relatives of Lithobium, Eriocnema, Ochthephilus, and Physeterostemon and seven gene regions, i.e., the nuclear ribosomal external and internal transcribed spacer regions, and the plastid regions accD-psaI, ndhF, psbK-psbL, rbcL, and rpl16. Lithobium groups as sister to a clade comprising all non-Olisbeoideae, Pternandreae, Henrietteeae, and Astronieae tribes. A new tribe, Lithobieae, is thus created to accommodate this placement. The capsular-fruited Eriocnema, Ochthephilus, and Physeterostemon form a clade that is sister to the berry-fruited Miconieae and widely separated from tribes with which they have been associated in historical classifications. Thus another new tribe, Eriocnemeae, is created. Lectotypes are designated for E. acaulis and L. cordatum.


2019 ◽  
Vol 54 (1) ◽  
Author(s):  
Irum Mukhtar ◽  
Marina Arredondo-Santoyo ◽  
Ma. Soledad Vázquez-Garcidueñas ◽  
Gerardo Vázquez-Marrufo

The aim of this study was isolation and molecular identification of laccase-producing saprophytic/phytopathogen Basidiomycetes species from different geographic regions with dominant vegetation of <em>Pinus</em>, <em>Abies</em>, and <em>Quercus</em> spp. in the state of Michoacán, Mexico. Soil samples and visible mycelial aggregates were collected for fungal isolations. Soil samples were processed using a soil particle washing technique, where a selective Ascomycetes inhibitor and guaiacol, as an indicator of saprophytic Basidiomycetes growth, were used. Most of the isolates were obtained from samples collected in Parque Nacional, José Ma. Morelos (Km 23), Charo, Michoacán, Mexico. Based on sequence comparisons and phylogenetic analysis of internal transcribed spacer regions (ITS1-5.8S-ITS4) with respect to reference taxa, identification of saprophytic/phytopathogen Basidiomycetes species was carried out. In total, 15 isolates from 12 genera (i.e., <em>Bjerkandera</em>, <em>Coriolopsis</em>, <em>Ganoderma</em>, <em>Hexagonia</em>, <em>Irpex</em>, <em>Limonomyces</em>, <em>Psathyrella</em>, <em>Peniophora</em>, <em>Phlebia</em>, <em>Phlebiopsis</em>, <em>Trametes</em>, and <em>Trichaptum</em>) and one species from family Corticiaceae were identified. This study will be useful for further investigations on biodiversity of soil Basidiomycetes in different ecosystems. At present, these isolates are being used in our various lab experiments and can be useful in different industrial and bioremediation applications.


2007 ◽  
Vol 45 (3) ◽  
pp. 1079-1079
Author(s):  
S. N. Leaw ◽  
H. C. Chang ◽  
H. F. Sun ◽  
R. Barton ◽  
J.-P. Bouchara ◽  
...  

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