Phylogenetic analysis of internal transcribed spacer regions of the genus Alternaria, and the significance of filament-beaked conidia

2002 ◽  
Vol 106 (2) ◽  
pp. 164-169 ◽  
Author(s):  
Hsin-Hung Chou ◽  
Wen-Shi Wu
Phytotaxa ◽  
2020 ◽  
Vol 453 (3) ◽  
pp. 157-178
Author(s):  
DARIN S. PENNEYS ◽  
FRANK ALMEDA ◽  
FABIAN A. MICHELANGELI ◽  
RENATO GOLDENBERG ◽  
ANGELA B. MARTINS ◽  
...  

Several genera in the Melastomataceae mostly endemic to southeastern Brazil have not been assessed for their tribal placement in a phylogenetic context. Most workers have placed the monotypic diminutive herb Lithobium in the Microlicieae, but some classifications have assigned it to either the Sonerileae or Bertolonieae. Another monotypic genus, Eriocnema, has been included in the Bertolonieae, Sonerileae, or Microlicieae. Physeterostemon contains five species, and has not previously been assigned to any tribe. Ochthephilus, a monotypic genus endemic to Guyana, was assigned to the Merianieae, but lack of fruit and seed data, and a paucity of collections, have impeded phylogenetic assessment. To assess the placement of these genera, we conducted a phylogenetic analysis of 91 species representing 73 genera from across the Melastomataceae, including 24 of the 27 putative close relatives of Lithobium, Eriocnema, Ochthephilus, and Physeterostemon and seven gene regions, i.e., the nuclear ribosomal external and internal transcribed spacer regions, and the plastid regions accD-psaI, ndhF, psbK-psbL, rbcL, and rpl16. Lithobium groups as sister to a clade comprising all non-Olisbeoideae, Pternandreae, Henrietteeae, and Astronieae tribes. A new tribe, Lithobieae, is thus created to accommodate this placement. The capsular-fruited Eriocnema, Ochthephilus, and Physeterostemon form a clade that is sister to the berry-fruited Miconieae and widely separated from tribes with which they have been associated in historical classifications. Thus another new tribe, Eriocnemeae, is created. Lectotypes are designated for E. acaulis and L. cordatum.


2019 ◽  
Vol 54 (1) ◽  
Author(s):  
Irum Mukhtar ◽  
Marina Arredondo-Santoyo ◽  
Ma. Soledad Vázquez-Garcidueñas ◽  
Gerardo Vázquez-Marrufo

The aim of this study was isolation and molecular identification of laccase-producing saprophytic/phytopathogen Basidiomycetes species from different geographic regions with dominant vegetation of <em>Pinus</em>, <em>Abies</em>, and <em>Quercus</em> spp. in the state of Michoacán, Mexico. Soil samples and visible mycelial aggregates were collected for fungal isolations. Soil samples were processed using a soil particle washing technique, where a selective Ascomycetes inhibitor and guaiacol, as an indicator of saprophytic Basidiomycetes growth, were used. Most of the isolates were obtained from samples collected in Parque Nacional, José Ma. Morelos (Km 23), Charo, Michoacán, Mexico. Based on sequence comparisons and phylogenetic analysis of internal transcribed spacer regions (ITS1-5.8S-ITS4) with respect to reference taxa, identification of saprophytic/phytopathogen Basidiomycetes species was carried out. In total, 15 isolates from 12 genera (i.e., <em>Bjerkandera</em>, <em>Coriolopsis</em>, <em>Ganoderma</em>, <em>Hexagonia</em>, <em>Irpex</em>, <em>Limonomyces</em>, <em>Psathyrella</em>, <em>Peniophora</em>, <em>Phlebia</em>, <em>Phlebiopsis</em>, <em>Trametes</em>, and <em>Trichaptum</em>) and one species from family Corticiaceae were identified. This study will be useful for further investigations on biodiversity of soil Basidiomycetes in different ecosystems. At present, these isolates are being used in our various lab experiments and can be useful in different industrial and bioremediation applications.


2011 ◽  
Vol 49 (3) ◽  
pp. 289-295 ◽  
Author(s):  
Patcharee Kammarnjesadakul ◽  
Tanapat Palaga ◽  
Kallaya Sritunyalucksana ◽  
Leonel Mendoza ◽  
Theerapong Krajaejun ◽  
...  

2007 ◽  
Vol 45 (3) ◽  
pp. 1079-1079
Author(s):  
S. N. Leaw ◽  
H. C. Chang ◽  
H. F. Sun ◽  
R. Barton ◽  
J.-P. Bouchara ◽  
...  

MycoKeys ◽  
2021 ◽  
Vol 84 ◽  
pp. 103-139
Author(s):  
Guo-Jie Li ◽  
Shou-Mian Li ◽  
Bart Buyck ◽  
Shi-Yi Zhao ◽  
Xue-Jiao Xie ◽  
...  

Three new species of Russulasection Ingratae, found in Guizhou and Jiangsu Provinces, southern China, are proposed: R. straminella, R. subpectinatoides and R. succinea. Photographs, line drawings and detailed morphological descriptions for these species are provided with comparisons against closely-related taxa. Phylogenetic analysis of the internal transcribed spacer (ITS) region supported the recognition of these specimens as new species. Additionally, R. indocatillus is reported for the first time from China and morphological and phylogenetic data are provided for the Chinese specimens.


2021 ◽  
Author(s):  
Saowapha Surawut ◽  
Sorasak Nak-aim ◽  
Chutapa Kunsook ◽  
Laddawan Kamhaengkul ◽  
Pornpimon Kanjanavas ◽  
...  

Abstract Ascomycetes mushrooms are fungi that produce ascospores in asci and some with perithecia. Not only they have a role of decomposer in ecology but also produced some bioactive compound, anti-microbial activity, and cytotoxicity. This study aims to explore the diversity of ascomycetes mushroom species in para rubber plantations and to identify them by morphological and sequence analysis of the internal transcribed spacer (ITS) region. The results found ascomycetes mushroom consist of Trichoderma pezizoides (RP1, % identity 98.79, DQ835513.1), Daldinia eschscholtzii (RP2, % identity 100, MN310384.1), Cookeina sulcipes (RP3, % identity 98.44, KY094620.1), Cookeina garethjonesii (RP4, % identity 99.06, KY094622.1), Cookeina tricholoma (RP5, % identity 100, KY094619.1) and Xylaria terricola (RP6, % identity 88.42, MF577038.1). Most of the ascomycetes in this study have previously been described in Thailand except Xylaria terricola. Additionally, phylogenetic analysis of ascomycetes mushroom showed high genetic relatedness with reference strains. Therefore, the sequence similarity and phylogenetic analysis confirmed the identity of six ascomycetes mushroom species, and further study of bioactive compound from these mushrooms may be investigated for other applications.


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