Tripeptides with non-code amino acids as potential serine proteases inhibitors

2012 ◽  
Vol 28 (3) ◽  
pp. 639-643 ◽  
Author(s):  
Agnieszka Markowska ◽  
Magdalena Bruzgo ◽  
Arkadiusz Surażyński ◽  
Krystyna Midura-Nowaczek
2015 ◽  
Vol 10 (2) ◽  
Author(s):  
M. Murwantoko ◽  
Chio Oka ◽  
Masashi Kawaichi

HtrA which is characterized by the combination of a trypsin-like catalytic domain with at least one C-terminalPDZ domain is a highly conserved family of serine proteases found in a wide range of organisms. However theidentified HtrA family numbers varies among spesies, for example the number of mammalian, Eschericia coli,fruit fly-HtrA family are 4, 3 and 1 gene respectively. One gene is predicted exist in zebrafish. Since no completeinformation available on zebrafish HtrA, in this paper zebrafish HtrA (zHtrA) gene was analyzed. The zHtrA isbelonged to HtrA1 member and predicted encodes 478 amino acids with a signal peptide, a IGF binding domain,a Kazal-type inhibitor domain in the up stream of HtrA-bacterial homolog. At the amino acid sequence the zHtrA1showed the 69%, 69%, 68%, 54% and 54% with the rat HtrA1, mouse HtrA1, human HtrA1, human HtrA3 andmouse HtrA4 respectively. The zHtrA1 is firstly expressed at 60 hpf and mainly in the vertebral rudiments in thetail region.


1987 ◽  
Author(s):  
A Heckel ◽  
K M Hasselbach

Up to now the three-dimensional structure of t-PA or parts of this enzyme is unknown. Using computer graphical methods the spatial structure of the enzymatic part of t-PA is predicted on the hypothesis, the three-dimensional backbone structure of t-PA being similar to that of other serine proteases. The t-PA model was built up in three steps:1) Alignment of the t-PA sequence with other serine proteases. Comparison of enzyme structures available from Brookhaven Protein Data Bank proved elastase as a basis for modeling.2) Exchange of amino acids of elastase differing from the t-PA sequence. The replacement of amino acids was performed such that backbone atoms overlapp completely and side chains superpose as far as possible.3) Modeling of insertions and deletions. To determine the spatial arrangement of insertions and deletions parts of related enzymes such as chymotrypsin or trypsin were used whenever possible. Otherwise additional amino acid sequences were folded to a B-turn at the surface of the proteine, where all insertions or deletions are located. Finally the side chain torsion angles of amino acids were optimised to prevent close contacts of neigh bouring atoms and to improve hydrogen bonds and salt bridges.The resulting model was used to explain binding of arginine 560 of plasminogen to the active site of t-PA. Arginine 560 interacts with Asp 189, Gly 19 3, Ser 19 5 and Ser 214 of t-PA (chymotrypsin numbering). Furthermore interaction of chromo-genic substrate S 2288 with the active site of t-PA was studied. The need for D-configuration of the hydrophobic amino acid at the N-terminus of this tripeptide derivative could be easily explained.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 1269-1269
Author(s):  
Tor Olofsson ◽  
Stefan Skold ◽  
Urban Gullberg

Abstract We have shown that secreted enzymatically inactive dipeptide proforms of the hematopoietic serine proteases proteinase 3 (PR3), azurocidin and granzymes A, B, H, K, and M, are able to reduce the fraction of granulopoietic progenitors (CFU-GM) in S-phase, whereas human leukocyte elastase (HLE) and cathepsin G lack this ability. The objective of the present study was to map the specific sequence(s) of proPR3 responsible for the downmodulation of S-phase, and to elucidate the signaling pathways involved. The S-phase downmodulatory effect has a fast onset within 90 min, is reversible, non-cytotoxic and counteracted by G-CSF. The fast onset suggests a direct interruption of DNA-synthesis, i.e. an S-phase arrest. Synthetic peptides corresponding to N-terminal sequences of PR3, purified recombinant PR3 and HLE, as well as hybrid proteins constructed by an interchange of the di-propeptide and the first fourteen amino acids of the mature form of PR3 and HLE, thus creating PR3/HLE and HLE/PR3, respectively, were tested for their ability to reduce the S-phase fraction of granulopoeitic progenitors (CFU-GM). Results from synthetic peptides showed that the common N-terminal motif of PR3 and other serine proteases, i.e. IVGG or IIGG, downmodulate the S-phase of CFU-GM at 40–80 nM concentration. The dipeptide proform of HLE does not inhibit CFU-GM in S-phase, despite carrying the motif IVGG. However, if the N-terminal of HLE is presented by the HLE/PR3 hybrid protein, it is fully active, as well as the reciprocal hybrid PR3/HLE, whereas a mutant form PR3(G4R)/HLE and the tetrapeptide IVGR both are inactive. These findings demonstrate that the downmodulatory effect on CFU-GM in S-phase is mediated by the first four N-terminal amino acids IVGG of PR3, and also demonstrate that the activity is dependent on the configuration of the proform providing the correct presentation of this N-terminal motif. The S-phase arrest induced by proPR3 is mediated by a signal transduction pathway engaging phosphatidylinositol 3-kinase (PI3K), Akt/PKB, nitric oxide synthase (NOS), NO and ribonucleotide reductase. Inhibition of PI3K by wortmannin or LY294002, or Akt/PKB by 1L-6-hydroxymethyl-chiro-inositol 2-[(R)-2-O-methyl-3-O-octadecylcarbonate] abrogate the S-phase arrest induced by proPR3. The non-specific NOS-inhibitor N-monomethyl-L-arginine, the two iNOS-specific inhibitors 1400W or GW274150, or the nitric oxide scavenger carboxy-PTIO all abrogate the S-phase downmodulatory effect of proPR3. Furthermore, the effect of proPR3 is abolished by providing 2′-deoxyadenosine and 2′-deoxyguanosine to the cells, suggesting inhibition of ribonucleotide reductase, probably through direct inhibition by NO. The S-phase arrest induced by proPR3 is reproduced by SNAP, a cell-permeable NO-donor, an effect that is readily reversed by carboxy-PTIO or 2′-deoxyadenosine/2′-deoxyguanosine supplementation. The S-phase arrest induced by proPR3 is also reproduced by hydroxyurea (50 uM), a known inhibitor of ribonucleotide reductase, and is readily reversed by 2′-deoxyadenosine/2′-deoxyguanosine supplementation. The S-phase arrest induced by proPR3 or tetrapeptide IVGG has been verified by demonstration of a reduced incorporation of BrdU (bromo-deoxy-uridine) in purified myeloid progenitor cells isolated by fluorescence activated cell sorting. In conclusion, we provide evidence that the S-phase downmodulatory activity of proPR3 towards granulopoietic progenitors is an S-phase arrest caused by inhibition of ribonucleotide reductase by nitric oxide, mediated through PI3K, Akt/PKB, and NOS.


2006 ◽  
Vol 10 (1) ◽  
pp. 81-83 ◽  
Author(s):  
Gleb D. Perekhodtsev

2011 ◽  
Vol 79 (8) ◽  
pp. 3438-3444 ◽  
Author(s):  
Markus O. Henke ◽  
Gerrit John ◽  
Christina Rheineck ◽  
Shashi Chillappagari ◽  
Lutz Naehrlich ◽  
...  

ABSTRACTAirway mucins are the major molecular constituents of mucus. Mucus forms the first barrier to invading organisms in the airways and is an important defense mechanism of the lung. We confirm that mucin concentrations are significantly decreased in airway secretions of subjects with cystic fibrosis (CF) who have chronicPseudomonas aeruginosainfection. In sputum from CF subjects without a history ofP. aeruginosa, we found no significant difference in the mucin concentration compared to mucus from normal controls. We demonstrate that mucins can be degraded by synthetic human neutrophil elastase (HNE) andP. aeruginosaelastase B (pseudolysin) and that degradation was inhibited by serine proteases inhibitors (diisopropyl fluorophosphates [DFP], phenylmethylsulfonyl fluoride [PMSF], and 1-chloro-3-tosylamido-7-amino-2-heptanone HCl [TLCK]). The mucin concentration in airway secretions from CF subjects is similar to that for normal subjects until there is infection byP. aeruginosa, and after that, the mucin concentration decreases dramatically. This is most likely due to degradation by serine proteases. The loss of this mucin barrier may contribute to chronic airway infection in the CF airway.


1988 ◽  
Vol 168 (5) ◽  
pp. 1839-1854 ◽  
Author(s):  
B S Kwon ◽  
D Kestler ◽  
E Lee ◽  
M Wakulchik ◽  
J D Young

Three new cDNA clones (designated MCSP-1, MCSP-2, and MCSP-3) encoding mouse serine proteases were isolated from cloned cytolytic T lymphocytes (CTL) by a modified differential screening procedure. The putative mature proteins of MCSP-2 and MCSP-3 are each composed of 228 amino acids with molecular weights of 25,477 and 25,360, respectively. NH2-terminal amino acids of MCSP-2- and MCSP-3-predicted proteins were identical to those reported for granzyme E and F, respectively. The third species, MCSP-1, was closely related to the two other cDNA species but approximately 30 amino acids equivalents of the NH2-terminal portion of the cDNA were not cloned. The amino acids forming the active sites of serine proteases were well conserved among the three predicted proteins. The active site pocket residue positioned six residues before the active-site Ser184 is alanine in MCSP-1, threonine in MCSP-2, and serine in MCSP-3, indicating that both MCSP-2 and MCSP-3 may have chymotrypsin-like specificity. There are three potential asparagine-linked glycosylation sites in MCSP-1 and MCSP-3, and four in MCSP-2-deduced amino acid sequences. Amino acid comparison of MCSP-1 with four other reported serine proteases whose active site pocket residue is alanine revealed that MCSP-1 was substantially different from the other molecules, indicating that MCSP-1 may be a new member of mouse T cell serine protease family. Antibodies made against a MCSP-1 lacZ gene fusion protein stain granules of CTL and react on immunoblots with two distinct granule protein bands of 29 and 35-40 kD. Only the 35-kD species labels with [3H]DFP. Since a protease cascade may play a key role in cytolytic lymphocyte activation, our isolation of cDNAs representative of unique serine esterases should help to investigate such a cascade process.


2012 ◽  
Vol 2012 ◽  
pp. 1-15 ◽  
Author(s):  
Philip G. Ashton-Rickardt

The serine proteases of T lymphocytes provide immunity to infection. Serine Proteases Inhibitors (serpins) control the recognition of antigen, effector function, and homeostatic control of T lymphocytes through the inhibition of serine protease targets. Serpins are important promoters of cellular viability through their inhibition of executioner proteases, which affects the survival and development of long-lived memory T cells. The potent antiapoptotic properties of serpins can also work against cellular immunity by protecting viruses and tumors from eradication by T lymphocytes. Recent insights from knockout mouse models demonstrate that serpins also are required for hematological progenitor cells and so are critical for the development of lineages other than T lymphocytes. Given the emerging role of serpins in multiple aspects of lymphocyte immunity and blood development, there is much potential for new therapeutic approaches based directly on serpins or knowledge gained from identifying their physiologically relevant protease targets.


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Zhirong Fu ◽  
Srinivas Akula ◽  
Michael Thorpe ◽  
Lars Hellman

Abstract In order for the intestinal mucosa to absorb dietary proteins they have to be digested into single amino acids or very short peptides of a length of not more than four amino acids. In order to study the efficiency of the digestive endopeptidases to digest folded proteins we have analyzed several target proteins under different conditions, native proteins, heat denatured and acid treated. The three pancreatic serine proteases, trypsin, chymotrypsin, and pancreatic elastase, were found to be remarkable inefficient in cleaving native folded proteins whereas pepsin, which acts at a very low pH (pH 1.2) was much more efficient, possibly due to the denaturing conditions and thereby better accessibility to internal cleavage sites at the low pH. Heat treatment improved the cleavage considerably by all three pancreatic enzymes, but acid treatment followed by return to neutral pH did not have any major effect. Cleavage at the low pH when the protein is in a denatured state, is apparently very efficient. This indicates that pepsin is the prime enzyme cleaving the properly folded native proteins and that the pancreatic enzymes primarily are involved in generating single amino acids or very short peptides for efficient uptake by the intestinal mucosa.


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