On stucture of phase portrait of one 5-dimensional gene network model

2021 ◽  
Vol 24 (3) ◽  
pp. 19-29
Author(s):  
N. B. Ayupova ◽  
V. P. Golubyatnikov
Keyword(s):  
Phase Portrait ◽  
Network Model ◽  
Gene Network

scholarly journals Analysis of functional importance of binding sites in the Drosophila gap gene network model

BMC Genomics ◽  
2015 ◽  
Vol 16 (Suppl 13) ◽  
pp. S7 ◽  
Author(s):  
Konstantin Kozlov ◽  
Vitaly V Gursky ◽  
Ivan V Kulakovskiy ◽  
Arina Dymova ◽  
Maria Samsonova
Keyword(s):  
Network Model ◽  
Binding Sites ◽  
Gene Network ◽  
Functional Importance ◽  
Gap Gene

scholarly journals Dynamical properties and path dependence in a gene-network model of cell differentiation

2020 ◽  
Author(s):  
Michele Braccini ◽  
Andrea Roli ◽  
Marco Villani ◽  
Roberto Serra
Keyword(s):  
Cell Differentiation ◽  
Network Model ◽  
Gene Network ◽  
Path Dependence ◽  
Control Mechanism ◽  
Boolean Networks ◽  
Biological Cells ◽  
Random Boolean Networks ◽  
Dynamical Properties

Abstract In this work, we explore the properties of a control mechanism exerted on random Boolean networks that takes inspiration from the methylation mechanisms in cell differentiation and consists in progressively freezing (i.e. clamping to 0) some nodes of the network. We study the main dynamical properties of this mechanism both theoretically and in simulation. In particular, we show that when applied to random Boolean networks, it makes it possible to attain dynamics and path dependence typical of biological cells undergoing differentiation.

scholarly journals APG: an Active Protein-Gene Network Model to Quantify Regulatory Signals in Complex Biological Systems

2013 ◽  
Vol 3 (1) ◽  
Author(s):  
Jiguang Wang ◽  
Yidan Sun ◽  
Si Zheng ◽  
Xiang-Sun Zhang ◽  
Huarong Zhou ◽  
...  
Keyword(s):  
Network Model ◽  
Gene Network ◽  
Protein Gene ◽  
Biological Systems ◽  
Active Protein
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