A systematic review of the tribes Hyphydrini Sharp and Pachydrini n. trib. (Coleoptera, Dytiscidae)

Based on a phylogenetic study using adult morphology, the tribe Hyphydrini is redefined as including the following 12 genera: Andex Sharp, Coelhydrus Sharp, Darwinhydrus Shnp, Hydropeplus Sharp, Primospes Sharp, Hyphovatus Wewalka & Biström, Agnoshydrus n. gen. (contains two species: A. laccophiloides (Régimbart) and A. densus n. sp.), Microdytes J. Balfour-Browne, Allopachria Zimmermann, Hyphydrus Illiger, Hovahydrus Biström, and Desmopachria Babington. The two genera Heterhydrus Fairmaire and Pachydrus Sharp are transferred to Pachydrini n. trib. All genera in the two tribes are reviewed including descriptions and check lists. The phylogenetic analysis provided support for the monophyly of each of the genera Allopachria and Desmopachria, whereas that of Microdytes, Hyphydrus and Hovahydrus is considered doubtful. An identification key is provided for the genera and subgenera of both tribes. The following n. comb. are given: Microdytes pasiricus (Csiki, 1938) previously in Hydrovatus and Agnoshydrus laccophiloides (Régimbart, 1888) previously in Microdytes.

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Diversity of pathogenic Pseudomonas isolated from citrus in Tunisia

AMB Express ◽

10.1186/s13568-020-01134-z ◽

2020 ◽

Vol 10 (1) ◽

Author(s):

Maroua Oueslati ◽

Magdalena Mulet ◽

Mohamed Zouaoui ◽

Charlotte Chandeysson ◽

Jorge Lalucat ◽

...

Keyword(s):

Phylogenetic Analysis ◽

Pseudomonas Syringae ◽

Ice Nucleation ◽

Phylogenetic Study ◽

Future Studies ◽

Citrus Orchards ◽

First Time ◽

New Cultivars

Abstract The damages observed in Tunisian citrus orchards have prompted studies on the Pseudomonas spp. responsible for blast and black pit. Prospective orchards between 2015 and 2017 showed that the diseases rapidly spread geographically and to new cultivars. A screening of Pseudomonas spp. isolated from symptomatic trees revealed their wide diversity according to phylogenetic analysis of their housekeeping rpoD and cts genes. The majority of strains were affiliated to Pseudomonas syringae pv. syringae (Phylogroup PG02b), previously described in Tunisia. However, they exhibited various BOX-PCR fingerprints and were not clonal. This work demonstrated, for the first time in Tunisia, the involvement of Pseudomonas cerasi (PG02a) and Pseudomonas congelans (PG02c). The latter did not show significant pathogenicity on citrus, but was pathogenic on cantaloupe and active for ice nucleation that could play a role in the disease. A comparative phylogenetic study of citrus pathogens from Iran, Montenegro and Tunisia revealed that P. syringae (PG02b) strains are closely related but again not clonal. Interestingly P. cerasi (PG02a) was isolated in two countries and seems to outspread. However, its role in the diseases is not fully understood and it should be monitored in future studies. The diversity of pathogenic Pseudomonas spp. and the extension of the diseases highlight that they have become complex and synergistic. It opens questions about which factors favor diseases and how to fight against them efficiently and with sustainable means.

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Bat echolocation in continental China: a systematic review and first acoustic identification key for the country

Mammal Research ◽

10.1007/s13364-021-00570-x ◽

2021 ◽

Author(s):

David López-Bosch ◽

Joe Chun-Chia Huang ◽

Yanping Wang ◽

Ana Filipa Palmeirim ◽

Luke Gibson ◽

...

Keyword(s):

Systematic Review ◽

Identification Key ◽

Acoustic Identification

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Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades

Reviews in Medical Virology ◽

10.1002/rmv.2037 ◽

2019 ◽

pp. e2037 ◽

Cited By ~ 8

Author(s):

Harapan Harapan ◽

Alice Michie ◽

Benediktus Yohan ◽

Pei‐Yun Shu ◽

Mudatsir Mudatsir ◽

...

Keyword(s):

Systematic Review ◽

Phylogenetic Analysis ◽

Dengue Viruses

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Molecular phylogeny of Pemphiginae (Hemiptera: Aphididae) inferred from nuclear gene EF-1α sequences

Bulletin of Entomological Research ◽

10.1017/s0007485308005828 ◽

2008 ◽

Vol 98 (5) ◽

pp. 499-507 ◽

Cited By ~ 13

Author(s):

H.C. Zhang ◽

G.X. Qiao

Keyword(s):

Phylogenetic Analysis ◽

Molecular Phylogeny ◽

Host Specificity ◽

Nuclear Gene ◽

Molecular Data ◽

Molecular Phylogenetic Analysis ◽

Phylogenetic Study ◽

Primary Host ◽

Molecular Phylogenetic Study ◽

Molecular Phylogenetic

AbstractThree traditional tribes of Fordini, Pemphigini and Eriosomatini comprise Pemphiginae, and there are two subtribes in Fordini and Pemphigini, respectively. Most of the species in this subfamily live heteroecious holocyclic lives with distinct primary host specificity. The three tribes of Pemphigini (except Prociphilina), Eriosomatini and Fordini use three families of plants, Salicaceae (Populus), Ulmaceae (Ulums) and Anacardiaceae (Pistacia and Rhus), as primary hosts, respectively, and form galls on them. Therefore, the Pemphigids are well known as gall makers, and their galls can be divided into true galls and pseudo-galls in type. We performed the first molecular phylogenetic study of Pemphiginae based on molecular data (EF-1α sequences). Results show that Pemphiginae is probably not a monophylum, but the monophyly of Fordini is supported robustly. The monophyly of Pemphigini is not supported, and two subtribes in it, Pemphigina and Prociphilina, are suggested to be raised to tribal level, equal with Fordini and Eriosomatini. The molecular phylogenetic analysis does not show definite relationships among the four tribes of Pemphiginae, as in the previous phylogenetic study based on morphology. It seems that the four tribes radiated at nearly the same time and then evolved independently. Based on this, we can speculate that galls originated independently four times in the four tribes, and there is no evidence to support that true galls are preceded by pseudo-galls, as in the case of thrips and willow sawflies.

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Phylogenetic analysis of DNA sequence data.

Techniques for work with plant and soil nematodes ◽

10.1079/9781786391759.0265 ◽

2021 ◽

pp. 265-282

Author(s):

Sergei A. Subbotin

Keyword(s):

Phylogenetic Analysis ◽

Sequence Data ◽

Sequence Similarity ◽

Phylogenetic Study ◽

Public Database ◽

Sample Collection ◽

Minimum Evolution ◽

Molecular Phylogenetic ◽

Pcr Products ◽

Selection Of

Abstract The goal of phylogenetics is to construct relationships that are true representations of the evolutionary history of a group of organisms or genes. The history inferred from phylogenetic analysis is usually depicted as branching in tree-like diagrams or networks. In nematology, phylogenetic studies have been applied to resolve a wide range of questions dealing with improving classifications and testing evolution processes, such as co-evolution, biogeography and many others. There are several main steps involved in a phylogenetic study: (i) selection of ingroup and outgroup taxa for a study; (ii) selection of one or several gene fragments for a study; (iii) sample collection, obtaining PCR products and sequencing of gene fragments; (iv) visualization, editing raw sequence data and sequence assembling; (v) search for sequence similarity in a public database; (vi) making and editing multiple alignment of sequences; (vii) selecting appropriate DNA model for a dataset; (viii) phylogenetic reconstruction using minimum evolution, maximum parsimony, maximum likelihood and Bayesian inference; (ix) visualization of tree files and preparation of tree for a publication; and (x) sequence submission to a public database. Molecular phylogenetic study requires particularly careful planning because it is usually relatively expensive in terms of the cost in reagents and time.

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A taxonomic review and phylogeny of the genera Hoplopisthius Senna, 1892 and Carcinopisthius Kolbe, 1892 (Coleoptera: Brentidae, Hoplopisthiini)

Zootaxa ◽

10.11646/zootaxa.2516.1.1 ◽

2010 ◽

Vol 2516 (1) ◽

pp. 1 ◽

Cited By ~ 1

Author(s):

ANTOINE MANTILLERI

Keyword(s):

Phylogenetic Analysis ◽

New Species ◽

Maximum Parsimony ◽

New Guinea ◽

Morphological Characters ◽

Identification Key ◽

Generic Level ◽

Australian Species ◽

Taxonomic Review ◽

One New Species

The genera Hoplopisthius and Carcinopisthius are reviewed. All the species are redescribed and illustrated and an updated identification key and distributional maps are provided. One new species from New Guinea is described (Hoplopisthius maximus n. sp.) and two new synonymies are proposed: Hoplopisthius celebensis Kolbe, 1892 = H. trichemerus Senna, 1892, n. syn. and Carcinopisthius lamingtoni Damoiseau, 1987 = C. forcipitiger Damoiseau, 1987, n. syn. Phylogenetic analysis using PAUP (maximum parsimony) was performed using 25 morphological characters of adults. This analysis shows the group Hoplopisthius + Carcinopisthius is monophyletic, but Carcinopisthius alone is paraphyletic. Nomenclatural changes at the generic level are made to reconcile nomenclature and phylogeny: Hoplopisthius is preserved; Carcinopisthius is downgraded to the rank of subgenus for the two oriental species H. oberthueri and H. fruhstorferi; and Pseudotaphroderes is resurrected as a third subgenus and includes all New-Guinean and Australian species.

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Eupholidoptera karatolosi sp.n. and E. mirzayani sp.n. (Orthoptera, Tettigoniidae), two new bushcrickets from Greece and Iran

Zootaxa ◽

10.11646/zootaxa.1562.1.2 ◽

2007 ◽

Vol 1562 (1) ◽

pp. 43-53

Author(s):

MOHSEN MOFIDI-NEYESTANAK ◽

DONALD L.J. QUICKE

Keyword(s):

New Species ◽

Dna Sequence ◽

Related Species ◽

Sequence Data ◽

Identification Key ◽

Phylogenetic Study ◽

Species Relationships ◽

Closely Related Species ◽

Dna Sequence Data ◽

Two New Species

Eupholidoptera karatolosi Mofidi-Neyestanak & Quicke from Greece and E. mirzayani Mofidi-Neyestanak & Quicke from Iran, two new species of bushcrickets (Orthoptera, Tettigoniidae: Platycleidini), are described and distinguished from closely related species based on morphology. Species relationships within Eupholidoptera Maran are discussed and some species are given new assignments. A simplified illustrated identification key to the species of Eupholidoptera is provided to accommodate the new species. They are being described since they have been used to generate DNA sequence data that will be published elsewhere as part of a phylogenetic study of the tribe Platycleidini.

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Convergence with naticids: phenotypic phylogenetic study on some Antarctic littorinoideans, with description of the zerotulid new genusPseudonatica, and its presence in Brazil (Mollusca, Caenogastropoda)

Journal of the Marine Biological Association of the United Kingdom ◽

10.1017/s002531541700025x ◽

2017 ◽

Vol 98 (6) ◽

pp. 1365-1381

Author(s):

Luiz Ricardo L. Simone

Keyword(s):

Phylogenetic Analysis ◽

Type Species ◽

New Genus ◽

The Other ◽

Taxonomic Position ◽

Phylogenetic Study ◽

Brazilian Coast ◽

Antarctic Species ◽

Oesophageal Gland ◽

Phenotypic Characters

Some Antarctic littorinoideans have a remarkable convergence with Naticoidea in shell and operculum features. Two naticid-like species of that group are studied in their phenotypic features in order to improve their taxonomy and to discuss the meaning of that convergence, as the former are herbivore-detritivore and the latter active predatory organisms. One of the studied species is the littorinidLaevilacunaria antarctica(Martens, 1885). The other belongs to a new genus –Pseudonatica, with the type species also newly described:P. antarctica, the genus is tentatively placed in Zerotulidae. Another Pseudonatica is also described,P. ampullarica, based only on shells collected by Marion-Dufresne French expedition off Brazilian coast, this finding expands the occurrence of zerotulids northwards. Besides the similarities of shell and operculum, other structures of these Antarctic species also show singular similarities with naticoideans, such as the wide foot, the complexity of opercular attachment in pedal opercular pad, the wide oesophageal gland, and the coiled arrangement of the pallial oviduct. The phenotypic characters were coded and inserted in a previous large phylogenetic analysis on Caenogastropoda (Simone, 2011), furnishing a wide basis for discussion on the characters, taxonomic position, evolution and adaptations of these organisms.

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Molecular Phylogenetic Analysis of the Orthoptera (Arthropoda, Insecta) based on Hexamerin Sequences

Zootaxa ◽

10.11646/zootaxa.4232.4.4 ◽

2017 ◽

Vol 4232 (4) ◽

pp. 523 ◽

Cited By ~ 2

Author(s):

XIAOHONG ZHANG ◽

JINFENG HAO ◽

YU XIA ◽

YAGE CHANG ◽

DAOCHUAN ZHANG ◽

...

Keyword(s):

Phylogenetic Analysis ◽

Bayesian Inference ◽

Phylogenetic Reconstruction ◽

Phylogenetic Study ◽

Neighbor Joining ◽

Morphological Classification ◽

Good Marker ◽

Insect Order ◽

Higher Taxa ◽

Molecular Phylogenetic

The higher taxa classification and phylogeny of the insect order Orthoptera have long been controversial. Hexamerin, as a member of the highly conserved arthropod hemocyanin superfamily, has been shown to be a good marker for the phylogenetic study of insects. However, few studies have used hexamerins on the phylogeny of Orthoptera. In this study, we determined twenty-seven different hexamerin subunit type sequences in seventeen speices of Orthoptera. In order to infer the phylogenetic relationships among the superfamilies within Orthoptera and test the monophyly of Orthoptera, phylogenic trees were reconstructed using Neighbor-Joining (NJ) and Bayesian inference (BI) methods with two dipluran and three hymenopteran hexamerin sequences as outgroups. The result supported the monophyly of Orthoptera, which includes two monophyletic suborders Caelifera and Ensifera. The Caelifera includes Acridoidea, Eumastacoidea, Tetrigoidea and Tridactyloidea, and the Ensifera includes Tettigonioidea, Grylloidea and Gryllotalpoidea. Our study is basically consistent with the study of morphological classification. In addition, our study indicates that a relatively comprehensive taxa sampling is essential to solve some problems in phylogenetic reconstruction.

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