Overlooked Species Diversity and Distribution in the Antarctic Mite Genus Stereotydeus

In the harsh Antarctic terrestrial ecosystems, invertebrates are currently confined to sparse and restricted ice free areas, where they have survived on multi-million-year timescales in refugia. The limited dispersal abilities of these invertebrate species, their specific habitat requirements, and the presence of geographical barriers can drastically reduce gene flow between populations, resulting in high genetic differentiation. On continental Antarctica, mites are one of the most diverse invertebrate groups. Recently, two new species of the free living prostigmatid mite genus Stereotydeus Berlese, 1901 were discovered, bringing the number of Antarctic and sub-Antarctic species of this genus up to 15, of which 7 occur along the coast of Victoria Land and in the Transantarctic Mountains. To examine the biodiversity of Stereotydeus spp., the present study combines phylogenetic, morphological and population genetic data of specimens collected from nine localities in Victoria Land. Genetically distinct intraspecific groups are spatially isolated in northern Victoria Land, while, for other species, the genetic haplogroups more often occur sympatrically in southern Victoria Land. We provide a new distribution map for the Stereotydeus species of Victoria Land, which will assist future decisions in matters of the protection and conservation of the unique Antarctic terrestrial fauna.

Cenozoic climatic changes drive evolution and dispersal of coastal benthic foraminifera in the Southern Ocean

The Antarctic coastal fauna is characterized by high endemism related to the progressive cooling of Antarctic waters and their isolation by the Antarctic Circumpolar Current. The origin of the Antarctic coastal fauna could involve either colonization from adjoining deep-sea areas or migration through the Drake Passage from sub-Antarctic areas. Here, we tested these hypotheses by comparing the morphology and genetics of benthic foraminifera collected from Antarctica, sub-Antarctic coastal settings in South Georgia, the Falkland Islands and Patagonian fjords. We analyzed four genera (Cassidulina, Globocassidulina, Cassidulinoides, Ehrenbergina) of the family Cassidulinidae that are represented by at least nine species in our samples. Focusing on the genera Globocassidulina and Cassidulinoides, our results showed that the first split between sub-Antarctic and Antarctic lineages took place during the mid-Miocene climate reorganization, probably about 20 to 17 million years ago (Ma). It was followed by a divergence between Antarctic species ~ 10 Ma, probably related to the cooling of deep water and vertical structuring of the water-column, as well as broadening and deepening of the continental shelf. The gene flow across the Drake Passage, as well as between South America and South Georgia, seems to have occurred from the Late Miocene to the Early Pliocene. It appears that climate warming during 7–5 Ma and the migration of the Polar Front breached biogeographic barriers and facilitated inter-species hybridization. The latest radiation coincided with glacial intensification (~ 2 Ma), which accelerated geographic fragmentation of populations, demographic changes, and genetic diversification in Antarctic species. Our results show that the evolution of Antarctic and sub-Antarctic coastal benthic foraminifera was linked to the tectonic and climatic history of the area, but their evolutionary response was not uniform and reflected species-specific ecological adaptations that influenced the dispersal patterns and biogeography of each species in different ways.

The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation

The macronuclear (MAC) genomes of ciliates belonging to the genus Euplotes species are comprised of numerous small DNA molecules, nanochromosomes, each typically encoding a single gene. These genomes are responsible for all gene expression during vegetative cell growth. Here, we report the analysis of the MAC genome from the Antarctic psychrophile Euplotes focardii. Nanochromosomes containing bacterial sequences were not found, suggesting that phenomena of horizontal gene transfer did not occur recently, even though this ciliate species has a substantial associated bacterial consortium. As in other euplotid species, E. focardii MAC genes are characterized by a high frequency of translational frameshifting. Furthermore, in order to characterize differences that may be consequent to cold adaptation and defense to oxidative stress, the main constraints of the Antarctic marine microorganisms, we compared E. focardii MAC genome with those available from mesophilic Euplotes species. We focussed mainly on the comparison of tubulin, antioxidant enzymes and heat shock protein (HSP) 70 families, molecules which possess peculiar characteristic correlated with cold adaptation in E. focardii. We found that α-tubulin genes and those encoding SODs and CATs antioxidant enzymes are more numerous than in the mesophilic Euplotes species. Furthermore, the phylogenetic trees showed that these molecules are divergent in the Antarctic species. In contrast, there are fewer hsp70 genes in E. focardii compared to mesophilic Euplotes and these genes do not respond to thermal stress but only to oxidative stress. Our results suggest that molecular adaptation to cold and oxidative stress in the Antarctic environment may not only be due to particular amino acid substitutions but also due to duplication and divergence of paralogous genes.

Expert Group on Antarctic Biodiversity Informatics: Coordinating the state-of-the-art internationally for biodiversity informatics in Antarctica

Biodiversity informatics have emerged as a key asset in wildlife and ecological conservation around the world. This is especially true in Antarctica, where climate change continues to threaten marine and terrestrial species. It is well documented that the polar regions experience the most drastic rate of climate change compared to the rest of the world (IPCC 2021). Research approaches within the scope of polar biodiversity informatics consist of computational architectures and systems, analysis and modelling methods, and human-computer interfaces, ranging from more traditional statistical techniques to more recent machine learning and artificial intelligence-based imaging techniques. Ongoing discussions include making datasets findable, accessible, interoperable and reusable (FAIR) (Wilkinson et al. 2016). The deployment of biodiversity informatics systems and coordination of standards around their utilization in the Antarctic are important areas of consideration. To bring together scientists and practitioners working at the nexus of informatics and Antarctic biodiversity, the Expert Group on Antarctic Biodiversity Informatics (EG-ABI) was formed under the Scientific Committee on Antarctic Research (SCAR). EG-ABI was created during the SCAR Life Sciences Standing Scientific Group meeting at the SCAR Open Science Conference in Portland Oregon, in July 2012, to advance work at this intersection by coordinating and participating in a range of projects across the SCAR biodiversity science portfolio. SCAR, meanwhile, is a thematic organisation of the International Science Council (ISC), which is the primary entity tasked with coordinating high-quality scientific research on all aspects of Antarctic sciences and humanities, including the Southern Ocean and the interplay between Antarctica and the other six continents. The expert group is led by an international steering committee of roughly ten members, who take an active role in leading related initiatives. Currently, researchers from Australia, Belgium, the United Kingdom, Chile, Germany, France, and the United States are represented on the committee. The current steering committee is comprised of a diverse range of scientists, including early-career researchers and scientists that have primary focuses in both the computational and ecological aspects of Antarctic biodiversity informatics. Current projects that are being coordinated or co-coordinated by EG-ABI include the SCAR/rOpenSci initiative, which is a collaboration with the rOpenSci community to improve resources for users of the R software package in Antarctic and Southern Ocean science. Additionally, EG-ABI has contributed to the POLA3R project (Polar Omics Linkages Antarctic Arctic and Alpine Regions), which is an information system dedicated to aid in the access and discovery of molecular microbial diversity data generated by Antarctic scientists. Furthermore, EG-ABI has trained and helped collate additional species trait information such as feeding and diet information, development, mobility and their importance to society, documented through Vulnerable Marine Ecosystem (VME) indicator taxa, in The Register of Antarctic Species (http://ras.biodiversity.aq/), and the comprehensive inventory of Antarctic and Southern Ocean organisms, which is also a component of the World Register of Marine Species (https://marinespecies.org/). The efforts highlighted are only some of the projects that the expert groups have contributed to. In our presentation, we discuss the previous accomplishments of the EG-ABI from the perspective of a currently serving steering committee member and outline its state in the status quo including collaborations and coordinated activities. We also highlight opportunities for engagement and the benefits for various stakeholders in terms of interacting with EG-ABI on multiple levels, within the SCAR ecosystem and elsewhere. Developing consistent and practical standards for data use in Antarctic ecology, in addition to fostering interdisciplinary and cross-sectoral collaborations for the successful deployment of conservation mechanisms, are key to a sustainable and biodiverse Antarctica, and EG-ABI is one of the premier organizations working towards these aims.

Warming, not CO2-acidified seawater, alters otolith development of juvenile Antarctic emerald rockcod (Trematomus bernacchii)

The combustion of fossil fuels is currently causing rapid rates of ocean warming and acidification worldwide. Projected changes in these parameters have been repeatedly observed to stress the physiological limits and plasticity of many marine species from the molecular to organismal levels. High latitude oceans are among the fastest changing ecosystems; therefore, polar species are projected to be some of the most vulnerable to climate change. Antarctic species are particularly sensitive to environmental change, having evolved for millions of years under stable ocean conditions. Otoliths, calcified structures found in a fish’s inner ear used to sense movement and direction, have been shown to be affected by both warming and CO2-acidified seawater in temperate and tropical fishes but there is no work to date on Antarctic fishes. In this study, juvenile emerald rockcod (Trematomus bernacchii) were exposed to projected seawater warming and CO2-acidification for the year 2100 over 28 days. Sagittal otoliths were analyzed for changes in area, perimeter, length, width and shape. We found ocean warming increased the growth rate of otoliths, while CO2-acidified seawater and the interaction of warming and acidification did not have an effect on otolith development. Elevated temperature also altered the shape of otoliths. If otolith development is altered under future warming scenarios, sensory functions such as hearing, orientation, and movement may potentially be impaired. Changes in these basic somatic abilities could have broad implications for the general capabilities and ecology of early life stages of Antarctic fishes.

Two New Species of the Mite Genus Stereotydeus Berlese, 1901 (Prostigmata: Penthalodidae) from Victoria Land, and a Key for Identification of Antarctic and Sub-Antarctic Species

Two new mite species belonging to the genus Stereotydeus Berlese, 1901 were discovered from locations along the coast of Victoria Land, continental Antarctica. Previous records of this genus in the area under study only reported the presence of S. belli and S. mollis. Although those studies included no morphological analyses, it has since been assumed that only these species were present within the area. Specimens of S. ineffabilis sp. nov. and S. nunatakis sp. nov. were obtained, sometimes in sympatry, from four different localities in Central and South Victoria Land and are here described and illustrated using optical and scanning electron microscopy (SEM) techniques. Features useful for identification of the two new Stereotydeus species include the size of the specimens, the length of the apical segment of pedipalps, the presence/absence of division of the femora, the position of solenidia, the shape and disposition of the rhagidiform organs on the tarsi, the shape of the apical setae of the tarsi, the numbers of aggenital setae and the position of the anal opening. A key to 14 of the 15 currently described Antarctic and sub-Antarctic Stereotydeus species is provided.

Weddell seal behaviour during an exceptional oceanographic event in the Filchner-Ronne Ice Shelf in 2017

Rapid and regionally contrasting climate changes have been observed around Antarctica. However, our understanding of the impact of these changes on ecosystems remains limited, and there is an urgent need to better identify habitats of Antarctic species. The Weddell seal (Leptonychotes weddellii) is a circumpolar mesopredator and an indicative species of Antarctic marine communities. It has been extensively studied in the western Ross Sea and East Antarctica, and an understanding of its ecology in the Weddell Sea in the wintertime is emerging. We documented the behavioural response(s) of four Weddell seals from February to June in 2017 in the Filchner-Ronne Ice Shelf region and related these to unusual oceanographic conditions in 2017. Unexpectedly, we found that Weddell seals had the longest foraging effort within the outflow of Ice Shelf Water or at its turbulent boundary. They also foraged on the eastern side of the trough from April to June within the Modified Warm Deep Water and seem to take advantage of the unusual conditions of persistent inflow of warm waters through the winter. Linking animal behavioural responses to oceanographic conditions is informative for quantifying rarely recorded events and provides great insight into how predators may respond to changing conditions.

Palmerolide PKS-NRPS gene clusters characterized from the microbiome of an Antarctic ascidian

Polyketides are a complex family of natural products that often serve competitive or pro-survival purposes but can also demonstrate bioactivity in human diseases as, for example cholesterol lowering agents, anti-infectives, or anti-tumor agents. Marine invertebrates and microbes are a rich source of polyketides. Palmerolide A, a polyketide isolated from the Antarctic ascidian Synoicum adareanum, is a vacuolar-ATPase inhibitor with potent bioactivity against melanoma cell lines. The biosynthetic gene clusters (BGC) responsible for production of secondary metabolites are encoded in the genomes of the producers as discrete genomic elements. A putative palmerolide BGC was identified from a S. adareanum metagenome based on a high degree of congruence with a chemical structure-based retrobiosynthetic prediction. Protein family homology analysis, conserved domain searches, and active site and motif identification were used to confirm the identity and propose the function of the 75 kb trans-acyltransferase (AT) polyketide synthase-non-ribosomal synthase (PKS-NRPS) domains responsible for the synthesis of palmerolide A. Though PKS systems often act in a predictable co-linear sequence, this BGC includes multiple trans-acting enzymatic domains, a non-canonical condensation termination domain, a bacterial luciferase-like monooxygenase (LLM), and multiple copies found within the metagenome-assembled genome (MAG) of Candidatus Synoicohabitans palmerolidicus. Detailed inspection of the five highly similar pal BGC copies suggests the potential for biosynthesis of other members of the palmerolide chemical family. This is the first delineation of a biosynthetic gene cluster from an Antarctic species. These findings have relevance for fundamental knowledge of PKS combinatorial biosynthesis and could enhance drug development efforts of palmerolide A through heterologous gene expression.