Zooplankton of tidal marsh channels in relation to environmental variables in the upper San Francisco Estuary

AbstractMechanisms driving the consumption and transport of tidal marsh nutrients and energy by fishes are of key interest in the San Francisco Estuary, CA, USA. By combining multiple data sources (gill-net catches, gut contents, channel morphology, tides), we modeled spatial and temporal patterns of fish abundance and gut fullness across a tidal marsh elevation gradient. Channel depth, microhabitat, and tide were important predictors of fish abundance and gut fullness. Species, feeding guild, and season were also important to fish abundance but not to gut fullness, suggesting that abundance was more related to physical constraints of shallow water than to prey availability. Multiple feeding guilds overlapped in space and time at interaction hotspots in subtidal channel habitat near the marsh entrance. In contrast, fish use of shallow intertidal marsh channels was more variable and indicated tradeoffs between foraging and predation. Gut content analysis revealed moderate-to-high gut fullness for all feeding guilds and models predicted high gut fullness in subtidal reaches during tidal flooding, after which fish fed intensively throughout the marsh. While mysids, amphipods, and detritus were common prey among feeding guilds, variation in prey consumption was apparent. Overall, complex tidal marsh hydrogeomorphology driving land-water exchange and residence time may diversify and enhance benthic and pelagic food web pathways to fishes and invertebrates. Furthermore, these findings substantiate the notion that dynamic tidal marshes in this system can support robust secondary production, foraging by multiple feeding guilds, and trophic transfer by fishes to the estuarine mosaic.

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Abundance and diversity of tidal marsh plants along the salinity gradient of the San Francisco Estuary: implications for global change ecology

Plant Ecology ◽

10.1007/s11258-009-9602-7 ◽

2009 ◽

Vol 205 (1) ◽

pp. 113-128 ◽

Cited By ~ 58

Author(s):

Elizabeth Burke Watson ◽

Roger Byrne

Keyword(s):

Global Change ◽

San Francisco ◽

Tidal Marsh ◽

Salinity Gradient ◽

San Francisco Estuary ◽

Global Change Ecology ◽

Abundance And Diversity

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South San Francisco Bay tidal marsh vegetation and elevation surveys-Corkscrew Marsh, Bird Island, and Palo Alto Baylands, California, 1983

Data Series ◽

10.3133/ds134 ◽

2005 ◽

Author(s):

James L. Orlando ◽

Judy Z. Drexler ◽

Kent G. Dedrick

Keyword(s):

San Francisco ◽

Tidal Marsh ◽

San Francisco Bay ◽

Palo Alto ◽

Marsh Vegetation ◽

Marsh Bird

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Supporting Restoration Decisions through Integration of Tree-Ring and Modeling Data: Reconstructing Flow and Salinity in the San Francisco Estuary over the Past Millennium

Water ◽

10.3390/w13152139 ◽

2021 ◽

Vol 13 (15) ◽

pp. 2139

Author(s):

Paul H. Hutton ◽

David M. Meko ◽

Sujoy B. Roy

Keyword(s):

San Francisco ◽

Tree Ring ◽

San Francisco Estuary ◽

Salinity Intrusion ◽

Estuarine Ecosystem ◽

Freshwater Flow ◽

The Past ◽

Decadal Scale ◽

Tree Ring Data ◽

Past Millennium

This work presents updated reconstructions of watershed runoff to San Francisco Estuary from tree-ring data to AD 903, coupled with models relating runoff to freshwater flow to the estuary and salinity intrusion. We characterize pre-development freshwater flow and salinity conditions in the estuary over the past millennium and compare this characterization with contemporary conditions to better understand the magnitude and seasonality of changes over this time. This work shows that the instrumented flow record spans the range of runoff patterns over the past millennium (averaged over 5, 10, 20 and 100 years), and thus serves as a reasonable basis for planning-level evaluations of historical hydrologic conditions in the estuary. Over annual timescales we show that, although median freshwater flow to the estuary has not changed significantly, it has been more variable over the past century compared to pre-development flow conditions. We further show that the contemporary period is generally associated with greater spring salinity intrusion and lesser summer–fall salinity intrusion relative to the pre-development period. Thus, salinity intrusion in summer and fall months was a common occurrence under pre-development conditions and has been moderated in the contemporary period due to the operations of upstream reservoirs, which were designed to hold winter and spring runoff for release in summer and fall. This work also confirms a dramatic decadal-scale hydrologic shift in the watershed from very wet to very dry conditions during the late 19th and early 20th centuries; while not unprecedented, these shifts have been seen only a few times in the past millennium. This shift resulted in an increase in salinity intrusion in the first three decades of the 20th century, as documented through early records. Population growth and extensive watershed modification during this period exacerbated this underlying hydrologic shift. Putting this shift in the context of other anthropogenic drivers is important in understanding the historical response of the estuary and in setting salinity targets for estuarine restoration. By characterizing the long-term behavior of San Francisco Estuary, this work supports decision-making in the State of California related to flow and salinity management for restoration of the estuarine ecosystem.

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Managed Wetlands Can Benefit Juvenile Chinook Salmon in a Tidal Marsh

Estuaries and Coasts ◽

10.1007/s12237-020-00880-4 ◽

2021 ◽

Author(s):

Nicole M. Aha ◽

Peter B. Moyle ◽

Nann A. Fangue ◽

Andrew L. Rypel ◽

John R. Durand

Keyword(s):

San Francisco ◽

Growth Rates ◽

Chinook Salmon ◽

Oncorhynchus Tshawytscha ◽

Nursery Habitat ◽

San Francisco Estuary ◽

Rice Fields ◽

Fish Growth ◽

Juvenile Chinook Salmon ◽

Juvenile Chinook

AbstractLoss of estuarine and coastal habitats worldwide has reduced nursery habitat and function for diverse fishes, including juvenile Chinook salmon (Oncorhynchus tshawytscha). Underutilized off-channel habitats such as flooded rice fields and managed ponds present opportunities for improving rearing conditions and increasing habitat diversity along migratory corridors. While experiments in rice fields have shown enhanced growth rates of juvenile fishes, managed ponds are less studied. To evaluate the potential of these ponds as a nursery habitat, juvenile Chinook salmon (~ 2.8 g, 63 mm FL) were reared in cages in four contrasting locations within Suisun Marsh, a large wetland in the San Francisco Estuary. The locations included a natural tidal slough, a leveed tidal slough, and the inlet and outlet of a tidally muted managed pond established for waterfowl hunting. Fish growth rates differed significantly among locations, with the fastest growth occurring near the outlet in the managed pond. High zooplankton biomass at the managed pond outlet was the best correlate of salmon growth. Water temperatures in the managed pond were also cooler and less variable compared to sloughs, reducing thermal stress. The stress of low dissolved oxygen concentrations within the managed pond was likely mediated by high concentrations of zooplankton and favorable temperatures. Our findings suggest that muted tidal habitats in the San Francisco Estuary and elsewhere could be managed to promote growth and survival of juvenile salmon and other native fishes.

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