scholarly journals Phytoplankton Group Identification Using Simulated and In situ Hyperspectral Remote Sensing Reflectance

2017 ◽  
Vol 4 ◽  
Author(s):  
Hongyan Xi ◽  
Martin Hieronymi ◽  
Hajo Krasemann ◽  
Rüdiger Röttgers
2017 ◽  
Vol 38 (7) ◽  
pp. 535-545 ◽  
Author(s):  
Jae-Jin Park ◽  
◽  
Sangwoo Oh ◽  
Kyung-Ae Park ◽  
Pierre-Yves Foucher ◽  
...  

2019 ◽  
Vol 11 (17) ◽  
pp. 2001 ◽  
Author(s):  
Qing Zhu ◽  
Fang Shen ◽  
Pei Shang ◽  
Yanqun Pan ◽  
Mengyu Li

Phytoplankton species composition research is key to understanding phytoplankton ecological and biogeochemical functions. Hyperspectral optical sensor technology allows us to obtain detailed information about phytoplankton species composition. In the present study, a transfer learning method to inverse phytoplankton species composition using in situ hyperspectral remote sensing reflectance and hyperspectral satellite imagery was presented. By transferring the general knowledge learned from the first few layers of a deep neural network (DNN) trained by a general simulation dataset, and updating the last few layers with an in situ dataset, the requirement for large numbers of in situ samples for training the DNN to predict phytoplankton species composition in natural waters was lowered. This method was established from in situ datasets and validated with datasets collected in different ocean regions in China with considerable accuracy (R2 = 0.88, mean absolute percentage error (MAPE) = 26.08%). Application of the method to Hyperspectral Imager for the Coastal Ocean (HICO) imagery showed that spatial distributions of dominant phytoplankton species and associated compositions could be derived. These results indicated the feasibility of species composition inversion from hyperspectral remote sensing, highlighting the advantages of transfer learning algorithms, which can bring broader application prospects for phytoplankton species composition and phytoplankton functional type research.


Sensors ◽  
2019 ◽  
Vol 19 (19) ◽  
pp. 4285 ◽  
Author(s):  
Shubha Sathyendranath ◽  
Robert Brewin ◽  
Carsten Brockmann ◽  
Vanda Brotas ◽  
Ben Calton ◽  
...  

Ocean colour is recognised as an Essential Climate Variable (ECV) by the Global Climate Observing System (GCOS); and spectrally-resolved water-leaving radiances (or remote-sensing reflectances) in the visible domain, and chlorophyll-a concentration are identified as required ECV products. Time series of the products at the global scale and at high spatial resolution, derived from ocean-colour data, are key to studying the dynamics of phytoplankton at seasonal and inter-annual scales; their role in marine biogeochemistry; the global carbon cycle; the modulation of how phytoplankton distribute solar-induced heat in the upper layers of the ocean; and the response of the marine ecosystem to climate variability and change. However, generating a long time series of these products from ocean-colour data is not a trivial task: algorithms that are best suited for climate studies have to be selected from a number that are available for atmospheric correction of the satellite signal and for retrieval of chlorophyll-a concentration; since satellites have a finite life span, data from multiple sensors have to be merged to create a single time series, and any uncorrected inter-sensor biases could introduce artefacts in the series, e.g., different sensors monitor radiances at different wavebands such that producing a consistent time series of reflectances is not straightforward. Another requirement is that the products have to be validated against in situ observations. Furthermore, the uncertainties in the products have to be quantified, ideally on a pixel-by-pixel basis, to facilitate applications and interpretations that are consistent with the quality of the data. This paper outlines an approach that was adopted for generating an ocean-colour time series for climate studies, using data from the MERIS (MEdium spectral Resolution Imaging Spectrometer) sensor of the European Space Agency; the SeaWiFS (Sea-viewing Wide-Field-of-view Sensor) and MODIS-Aqua (Moderate-resolution Imaging Spectroradiometer-Aqua) sensors from the National Aeronautics and Space Administration (USA); and VIIRS (Visible and Infrared Imaging Radiometer Suite) from the National Oceanic and Atmospheric Administration (USA). The time series now covers the period from late 1997 to end of 2018. To ensure that the products meet, as well as possible, the requirements of the user community, marine-ecosystem modellers, and remote-sensing scientists were consulted at the outset on their immediate and longer-term requirements as well as on their expectations of ocean-colour data for use in climate research. Taking the user requirements into account, a series of objective criteria were established, against which available algorithms for processing ocean-colour data were evaluated and ranked. The algorithms that performed best with respect to the climate user requirements were selected to process data from the satellite sensors. Remote-sensing reflectance data from MODIS-Aqua, MERIS, and VIIRS were band-shifted to match the wavebands of SeaWiFS. Overlapping data were used to correct for mean biases between sensors at every pixel. The remote-sensing reflectance data derived from the sensors were merged, and the selected in-water algorithm was applied to the merged data to generate maps of chlorophyll concentration, inherent optical properties at SeaWiFS wavelengths, and the diffuse attenuation coefficient at 490 nm. The merged products were validated against in situ observations. The uncertainties established on the basis of comparisons with in situ data were combined with an optical classification of the remote-sensing reflectance data using a fuzzy-logic approach, and were used to generate uncertainties (root mean square difference and bias) for each product at each pixel.


2020 ◽  
Vol 12 (17) ◽  
pp. 2774
Author(s):  
Marta Konik ◽  
Piotr Kowalczuk ◽  
Monika Zabłocka ◽  
Anna Makarewicz ◽  
Justyna Meler ◽  
...  

The Nordic Seas and the Fram Strait regions are a melting pot of a number of water masses characterized by distinct optical water properties. The warm Atlantic Waters transported from the south and the Arctic Waters from the north, combined with the melt waters contributing to the Polar Waters, mediate the dynamic changes of the year-to-year large-scale circulation patterns in the area, which often form complex frontal zones. In the last decade, moreover, a significant shift in phytoplankton phenology in the area has been observed, with a certain northward expansion of temperate phytoplankton communities into the Arctic Ocean which could lead to a deterioration in the performance of remote sensing algorithms. In this research, we exploited the capability of the satellite sensors to monitor those inter-annual changes at basin scales. We propose locally adjusted algorithms for retrieving chlorophyll a concentrations Chla, absorption by particles ap at 443 and 670 nm, and total absorption atot at 443 and 670 nm developed on the basis of intensive field work conducted in 2013–2015. Measured in situ hyper spectral remote sensing reflectance has been used to reconstruct the MODIS and OLCI spectral channels for which the proposed algorithms have been adapted. We obtained MNB ≤ 0.5% for ap(670) and ≤3% for atot(670) and Chla. RMS was ≤30% for most of the retrieved optical water properties except ap(443) and Chla. The mean monthly mosaics of ap(443) computed on the basis of the proposed algorithm were used for reconstructing the spatial and temporal changes of the phytoplankton biomass in 2013–2015. The results corresponded very well with in situ measurements.


2013 ◽  
Vol 39 ◽  
pp. 137-150 ◽  
Author(s):  
David M. O'Donnell ◽  
Steven W. Effler ◽  
Christopher M. Strait ◽  
Feng Peng ◽  
MaryGail Perkins

2015 ◽  
Vol 54 (20) ◽  
pp. 6367 ◽  
Author(s):  
Yuanzhi Zhang ◽  
Zhaojun Huang ◽  
Chuqun Chen ◽  
Yijun He ◽  
Tingchen Jiang

2006 ◽  
Vol 45 (21) ◽  
pp. 5414 ◽  
Author(s):  
Susanne E. Craig ◽  
Steven E. Lohrenz ◽  
Zhongping Lee ◽  
Kevin L. Mahoney ◽  
Gary J. Kirkpatrick ◽  
...  

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