scholarly journals GPU-Enabled Shadow Casting for Solar Potential Estimation in Large Urban Areas. Application to the Solar Cadaster of Greater Geneva

2020 ◽  
Vol 10 (15) ◽  
pp. 5361
Author(s):  
Nabil Stendardo ◽  
Gilles Desthieux ◽  
Nabil Abdennadher ◽  
Peter Gallinelli
Keyword(s):  
High Resolution ◽  
Urban Areas ◽  
Graphics Processing Units ◽  
Large Scale ◽  
View Factor ◽  
Direct Sunlight ◽  
Sky View Factor ◽  
Shadow Casting ◽  
Graphics Processing ◽  
Better Than

In the context of encouraging the development of renewable energy, this paper deals with the description of a software solution for mapping out solar potential in a large scale and in high resolution. We leverage the performance provided by Graphics Processing Units (GPUs) to accelerate shadow casting procedures (used both for direct sunlight exposure and the sky view factor), as well as use off-the-shelf components to compute an average weather pattern for a given area. Application of the approach is presented in the context of the solar cadaster of Greater Geneva (2000 km2). The results show that doing the analysis on a square tile of 3.4 km at a resolution of 0.5 m takes up to two hours, which is better than what we were achieving with the previous work. This shows that GPU-based calculations are highly competitive in the field of solar potential modeling.

scholarly journals Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units

2019 ◽  
Author(s):  
Wout Bittremieux ◽  
Kris Laukens ◽  
William Stafford Noble
Keyword(s):  
High Resolution ◽  
Graphics Processing Units ◽  
Protein Modification ◽  
Large Scale ◽  
Computational Cost ◽  
Selection Procedure ◽  
Spectral Library ◽  
Data Set ◽  
Graphics Processing ◽  
Feature Hashing

AbstractOpen modification searching (OMS) is a powerful search strategy to identify peptides with any type of modification. OMS works by using a very wide precursor mass window to allow modified spectra to match against their unmodified variants, after which the modification types can be inferred from the corresponding precursor mass differences. A disadvantage of this strategy, however, is the large computational cost, because each query spectrum has to be compared against a multitude of candidate peptides.We have previously introduced the ANN-SoLo tool for fast and accurate open spectral library searching. ANN-SoLo uses approximate nearest neighbor indexing to speed up OMS by selecting only a limited number of the most relevant library spectra to compare to an unknown query spectrum. Here we demonstrate how this candidate selection procedure can be further optimized using graphics processing units. Additionally, we introduce a feature hashing scheme to convert high-resolution spectra to low-dimensional vectors. Based on these algorithmic advances, along with low-level code optimizations, the new version of ANN-SoLo is up to an order of magnitude faster than its initial version. This makes it possible to efficiently perform open searches on a large scale to gain a deeper understanding about the protein modification landscape. We demonstrate the computational efficiency and identification performance of ANN-SoLo based on a large data set of the draft human proteome.ANN-SoLo is implemented in Python and C++. It is freely available under the Apache 2.0 license at https://github.com/bittremieux/ANN-SoLo.

scholarly journals A lightweight approach to performance portability with targetDP

2016 ◽  
Vol 32 (2) ◽  
pp. 288-301
Author(s):  
Alan Gray ◽  
Kevin Stratford
Keyword(s):  
Particle Physics ◽  
Message Passing ◽  
Graphics Processing Units ◽  
High Performance ◽  
Large Scale ◽  
Message Passing Interface ◽  
Graphics Processing Unit ◽  
Processing Unit ◽  
Performance Portability ◽  
Graphics Processing

Leading high performance computing systems achieve their status through use of highly parallel devices such as NVIDIA graphics processing units or Intel Xeon Phi many-core CPUs. The concept of performance portability across such architectures, as well as traditional CPUs, is vital for the application programmer. In this paper we describe targetDP, a lightweight abstraction layer which allows grid-based applications to target data parallel hardware in a platform agnostic manner. We demonstrate the effectiveness of our pragmatic approach by presenting performance results for a complex fluid application (with which the model was co-designed), plus separate lattice quantum chromodynamics particle physics code. For each application, a single source code base is seen to achieve portable performance, as assessed within the context of the Roofline model. TargetDP can be combined with Message Passing Interface (MPI) to allow use on systems containing multiple nodes: we demonstrate this through provision of scaling results on traditional and graphics processing unit-accelerated large scale supercomputers.

scholarly journals Data driven global weather predictions at high resolutions

2021 ◽  
Author(s):  
John Taylor ◽  
Pablo Larraonndo ◽  
Bronis de Supinski
Keyword(s):  
High Resolution ◽  
Graphics Processing Units ◽  
Weather Forecasting ◽  
Weather Prediction ◽  
Atmospheric Science ◽  
Data Driven ◽  
Research And Innovation ◽  
Future State ◽  
Graphics Processing ◽  
Quantities Of Interest

Abstract Society has benefited enormously from the continuous advancement in numerical weather prediction that has occurred over many decades driven by a combination of outstanding scientific, computational and technological breakthroughs. Here we demonstrate that data driven methods are now positioned to contribute to the next wave of major advances in atmospheric science. We show that data driven models can predict important meteorological quantities of interest to society such as global high resolution precipitation fields (0.25 degrees) and can deliver accurate forecasts of the future state of the atmosphere without prior knowledge of the laws of physics and chemistry. We also show how these data driven methods can be scaled to run on super-computers with up to 1024 modern graphics processing units (GPU) and beyond resulting in rapid training of data driven models, thus supporting a cycle of rapid research and innovation. Taken together, these two results illustrate the significant potential of data driven methods to advance atmospheric science and operational weather forecasting.

Data-Parallel Techniques for Agent-Based Tissue Modeling on Graphics Processing Units

2008 ◽  
Author(s):  
Ryan S. Richards ◽  
Mikola Lysenko ◽  
Roshan M. D’Souza ◽  
Gary An
Keyword(s):  
Real Time ◽  
Graphics Processing Units ◽  
Large Scale ◽  
Experimental Studies ◽  
Test Case ◽  
Cell Systems ◽  
Von Neumann ◽  
Agent Based ◽  
Cell Behaviors ◽  
Graphics Processing

Agent-Based Modeling has been recently recognized as a method for in-silico multi-scale modeling of biological cell systems. Agent-Based Models (ABMs) allow results from experimental studies of individual cell behaviors to be scaled into the macro-behavior of interacting cells in complex cell systems or tissues. Current generation ABM simulation toolkits are designed to work on serial von-Neumann architectures, which have poor scalability. The best systems can barely handle tens of thousands of agents in real-time. Considering that there are models for which mega-scale populations have significantly different emergent behaviors than smaller population sizes, it is important to have the ability to model such large scale models in real-time. In this paper we present a new framework for simulating ABMs on programmable graphics processing units (GPUs). Novel algorithms and data-structures have been developed for agent-state representation, agent motion, and replication. As a test case, we have implemented an abstracted version of the Systematic Inflammatory Response System (SIRS) ABM. Compared to the original implementation on the NetLogo system, our implementation can handle an agent population that is over three orders of magnitude larger with close to 40 updates/sec. We believe that our system is the only one of its kind that is capable of efficiently handling realistic problem sizes in biological simulations.

Sign in / Sign up

Export Citation Format

Share Document