scholarly journals Halogen Bonds Fabricate 2D Molecular Self-Assembled Nanostructures by Scanning Tunneling Microscopy

Crystals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1057
Author(s):  
Yi Wang ◽  
Xinrui Miao ◽  
Wenli Deng
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Self Assembly ◽  
Density Functional ◽  
Deep Understanding ◽  
Halogen Bonding ◽  
The Self ◽  
Scanning Tunneling ◽  
Halogen Bonds ◽  
Tunneling Microscopy ◽  
Self Assembled

Halogen bonds are currently new noncovalent interactions due to their moderate strength and high directionality, which are widely investigated in crystal engineering. The study about supramolecular two-dimensional architectures on solid surfaces fabricated by halogen bonding has been performed recently. Scanning tunneling microscopy (STM) has the advantages of realizing in situ, real-time, and atomic-level characterization. Our group has carried out molecular self-assembly induced by halogen bonds at the liquid–solid interface for about ten years. In this review, we mainly describe the concept and history of halogen bonding and the progress in the self-assembly of halogen-based organic molecules at the liquid/graphite interface in our laboratory. Our focus is mainly on (1) the effect of position, number, and type of halogen substituent on the formation of nanostructures; (2) the competition and cooperation of the halogen bond and the hydrogen bond; (3) solution concentration and solvent effects on the molecular assembly; and (4) a deep understanding of the self-assembled mechanism by density functional theory (DFT) calculations.

scholarly journals Solvent-Dependent Self-Assembly of 4,7-Dibromo-5,6-bis(octyloxy)benzo[c][1,2,5] Thiadiazole on Graphite Surface by Scanning Tunneling Microscopy

2013 ◽  
Vol 2013 ◽  
pp. 1-7 ◽  
Author(s):  
Bao Zha ◽  
Xinrui Miao ◽  
Yijing Li ◽  
Pei Liu ◽  
Kai Miao ◽  
...  
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Self Assembly ◽  
Lamellar Structure ◽  
Octanoic Acid ◽  
Linear Structure ◽  
Halogen Bonding ◽  
The Self ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Solvent Molecules

Solvent effect on self-assembly of 4,7-dibromo-5,6-bis(octyloxy)benzo[c][1,2,5] thiadiazole (DBT) on a highly oriented graphite (HOPG) surface was investigated by scanning tunneling microscopy (STM) by using 1-phenyloctane, 1-octanoic acid, and 1-octanol as the solvents. Two different patterns were obtained in 1-phenyloctane and 1-octanoic acid, suggesting that the self-assembly of DBT was solvent dependent. At the 1-phenyloctane/HOPG interface, a linear structure was revealed due to the intermolecular halogen bonding. When 1-octanoic acid and 1-octanol are used as the solvents, the coadsorption of solvent molecules resulting from the hydrogen bonding between DBT and solvent made an important contribution to the formation of a lamellar structure. The results demonstrate that solvents could affect the molecular self-assembly according to the variational intermolecular interactions.

Understanding molecular self-assembly of a diol compound by considering competitive interactions

2016 ◽  
Vol 18 (39) ◽  
pp. 27390-27395 ◽  
Author(s):  
Oscar Díaz Arado ◽  
Maike Luft ◽  
Harry Mönig ◽  
Philipp Alexander Held ◽  
Armido Studer ◽  
...  
Keyword(s):  
Density Functional Theory ◽  
Scanning Tunneling Microscopy ◽  
Self Assembly ◽  
Density Functional ◽  
Competitive Interactions ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Functional Theory ◽  
Chemical Groups

With a combination of scanning tunneling microscopy and density functional theory, effects on molecular self-assembly involving two distinct chemical groups were investigated.

scholarly journals Realizing Two-Dimensional Spin Arrays on Surfaces via Halogen-Bonding Molecular Self-Assembly

2021 ◽  
Author(s):  
Dingguan Wang ◽  
Zishen Wang ◽  
Shaofei Wu ◽  
Arramel Arramel ◽  
Xinmao Yin ◽  
...  
Keyword(s):  
Single Molecule ◽  
Self Assembly ◽  
Halogen Bonding ◽  
Scanning Tunneling ◽  
Two Dimensional ◽  
Halogen Bonds ◽  
Tunneling Microscopy ◽  
Single Molecule Level ◽  
Magnetic Devices ◽  
Temperature Scanning

Well-ordered spin arrays are highly desirable for next-generation molecule-based magnetic devices, and yet its synthetic method remains a challenging task. Herein, we demonstrate the realization of two-dimensional supramolecular spin arrays on surfaces via halogen-bonding molecular self-assembly. A bromine-terminal perchlorotriphenymethyl radical with net carbon spin was synthesized and deposited on Au(111) to achieve two-dimensional supramolecular spin arrays. By taking advantage of the diversity of halogen bonds, five supramolecular spin arrays are presented with ultrahigh spin densities (up to the value of 3 × 10<sup>13</sup> spins at the size of a flash drive), as probed by low-temperature scanning tunneling microscopy at the single-molecule level. First principle calculations verify that the formation of three distinct types of halogen bonds can be used to tailor supramolecular phases via molecular coverage and annealing temperature. Our work demonstrates supramolecular self-assembly as a promising method to engineering 2D spin arrays for potential application in magnetic devices.

Scanning Tunneling Microscopy Reveals Single-Molecule Insights into the Self-Assembly of Amyloid Fibrils

ACS Nano ◽  
2012 ◽  
Vol 6 (8) ◽  
pp. 6882-6889 ◽  
Author(s):  
Nataliya Kalashnyk ◽  
Jakob T. Nielsen ◽  
Erik H. Nielsen ◽  
Troels Skrydstrup ◽  
Daniel E. Otzen ◽  
...  
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Single Molecule ◽  
Self Assembly ◽  
Amyloid Fibrils ◽  
The Self ◽  
Scanning Tunneling ◽  
Tunneling Microscopy

scholarly journals Potential Driven Non-Reactive Phase Transitions of Ordered Porphyrin Molecules on Iodine-Modified Au(100): An Electrochemical Scanning Tunneling Microscopy (EC-STM) Study

Surfaces ◽  
2018 ◽  
Vol 1 (1) ◽  
pp. 12-28 ◽  
Author(s):  
Tomasz Kosmala ◽  
Matías Blanco ◽  
Gaetano Granozzi ◽  
Klaus Wandelt
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Long Range ◽  
Self Assembly ◽  
Electrostatic Interactions ◽  
The Self ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Electrode Potentials ◽  
Electrochemical Scanning Tunneling Microscopy

The modelling of long-range ordered nanostructures is still a major issue for the scientific community. In this work, the self-assembly of redox-active tetra(N-methyl-4-pyridyl)-porphyrin cations (H2TMPyP) on an iodine-modified Au(100) electrode surface has been studied by means of Cyclic Voltammetry (CV) and in-situ Electrochemical Scanning Tunneling Microscopy (EC-STM) with submolecular resolution. While the CV measurements enable conclusions about the charge state of the organic species, in particular, the potentio-dynamic in situ STM results provide new insights into the self-assembly phenomena at the solid-liquid interface. In this work, we concentrate on the regime of positive electrode potentials in which the adsorbed molecules are not reduced yet. In this potential regime, the spontaneous adsorption of the H2TMPyP molecules on the anion precovered surface yields the formation of up to five different potential-dependent long-range ordered porphyrin phases. Potentio-dynamic STM measurements, as a function of the applied electrode potential, show that the existing ordered phases are the result of a combination of van der Waals and electrostatic interactions.

Investigation of the non-covalent interactions of molecular self-assembly by scanning tunneling microscopy using the association of aromatic structures in pyrene-4,5,9,10-tetraone and phenanthrene-9,10-dione molecules

RSC Advances ◽  
2015 ◽  
Vol 5 (125) ◽  
pp. 103316-103320 ◽  
Author(s):  
Huiling Zhao ◽  
Shuai Zhang ◽  
Shuang Li ◽  
Xin Song ◽  
Wei Liu ◽  
...  
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Self Assembly ◽  
The Self ◽  
Self Assembled Monolayers ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Aromatic Molecules ◽  
Assembled Monolayers ◽  
Non Covalent Interactions ◽  
Covalent Interactions

The self-assembled monolayers of aromatic molecules (pyrene-4,5,9,10-tetraone and phenanthrene-9,10-dione) were investigated at the liquid/solid (1-phenyloctane/graphite) interface using scanning tunneling microscopy, respectively.

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