scholarly journals Bacterial Community Shifts Driven by Nitrogen Pollution in River Sediments of a Highly Urbanized City

2019 ◽  
Vol 16 (20) ◽  
pp. 3794 ◽  
Author(s):  
Xianbiao Lin ◽  
Dengzhou Gao ◽  
Kaijun Lu ◽  
Xiaofei Li
Keyword(s):  
Bacterial Community ◽  
River Sediments ◽  
Nitrogen Pollution ◽  
Urban River ◽  
Urban Rivers ◽  
Negative Effects ◽  
Rapid Urbanization ◽  
Community Shifts ◽  
Bacterial Richness ◽  
Relative Abundances

Effects of nitrogen pollution on bacterial community shifts in river sediments remain barely understood. Here, we investigated the bacterial communities in sediments of urban and suburban rivers in a highly urbanized city, Shanghai. Sediment nitrate (NO3−) and ammonia (NH4+) were highly accumulated in urban river. Operation Taxonomic Units (OTUs), Abundance-based Coverage Estimators (ACEs) and Chao 1 estimator in urban rivers were slightly lower than those in suburban rivers, while Shannon and Simpson indices were higher in urban rivers than those in suburban rivers. Proteobacteria, Firmicutes, and Bacteroidetes were the dominant bacterial phylum communities, accounting for 68.5–84.9% of all communities. In particular, the relative abundances of Firmicutes and Nitrospirae were significantly higher in suburban rivers than in urban rivers, while relative abundances of Bacteroidetes, Verrucomicrobia, and Spirochaetes were significantly lower in suburban rivers than in urban rivers. NH4+ was significantly and negatively correlated with abundances of Firmicutes, Nitrospirae, and Actinobacteria. Importantly, the significant and negative effects of sediment NH4+ on bacterial richness and diversity suggested that nitrogen pollution likely contribute to the decrease in the bacterial richness and diversity. The results highlight that nitrogen enrichment could drive the shifts of bacterial abundance and diversity in the urban river sediments where are strongly influenced by human activities under the rapid urbanization stress.

scholarly journals Impact of long-term industrial contamination on the bacterial communities in urban river sediments

2020 ◽  
Author(s):  
Lei Zhang ◽  
Demei Tu ◽  
Xingchen Li ◽  
Wenxuan Lu ◽  
Jing Li
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Bacterial Communities ◽  
Industrial Pollution ◽  
River Sediments ◽  
Urban River ◽  
Industrial Contamination ◽  
Different Types

Abstract Background: The contamination of the aquatic environment of urban rivers with industrial wastewater has affected the abiotic conditions and biological activities of the trophic levels of the ecosystem, particularly sediments. However, most current research about microorganism in urban aquatic environments has focused on indicator bacteria related to feces and organic pollution. Meanwhile, they ignored the interactions among microorganisms. To deeply understand the impact of industrial contamination on microbial community, we study the bacterial community structure and diversity in river sediments under the influence of different types of industrial pollution by Illumina MiSeq high-throughput sequencing technology and conduct a more detailed analysis of microbial community structure through co-occurrence networks.Results: The overall community composition and abundance of individual bacterial groups differed between samples. In addition, redundancy analysis indicated that the structure of the bacterial community in river sediments was influenced by a variety of environmental factors. TN, TP, TOC and metals (Cu, Zn and Cd) were the most important driving factors that determined the bacterial community in urban river sediments (P <0.01). According to PICRUSt analysis, the bacterial communities in different locations had similar overall functional profiles. It is worth noting that the 15 functional genes related to xenobiotics biodegradation and metabolism were the most abundant in the same location. The non-random assembly patterns of bacterial composition in different types of industrially polluted sediments were determined by a co-occurrence network. Environmental conditions resulting from different industrial pollutants may play an important role in determining their co-occurrence patterns of these bacterial taxa. Among them, the bacterial taxa involved in carbon and nitrogen cycles in module I were relatively abundant, and the bacterial taxa in module II were involved in the repair of metal pollution.Conclusions: Our data indicate that long-term potential interactions between different types of industrial pollution and taxa collectively affect the structure of the bacterial community in urban river sediments.

scholarly journals Impact of long-term industrial contamination on the bacterial communities in urban river sediments

2020 ◽  
Author(s):  
lei zhang ◽  
Demei Tu ◽  
Xingchen Li ◽  
Wenxuan Lu ◽  
Jing Li
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Bacterial Communities ◽  
Industrial Pollution ◽  
River Sediments ◽  
Urban River ◽  
Bacterial Phyla ◽  
Different Types

Abstract Background: The contamination of the aquatic environment of urban rivers with industrial wastewater has affected the abiotic conditions and biological activities of the trophic levels of the ecosystem, particularly sediments. However, most current research about microorganism in urban aquatic environments has focused on indicator bacteria related to feces and organic pollution. Meanwhile, they ignored the interactions among microorganisms. To deeply understand the impact of industrial contamination on microbial community, we study the bacterial community structure and diversity in river sediments under the influence of different types of industrial pollution by Illumina MiSeq high-throughput sequencing technology and conduct a more detailed analysis of microbial community structure through co-occurrence networks.Results: Although the composition of dominant bacterial phyla in different sediment samples was similar, their relative abundance was different. These dominant bacterial phyla showed significant differences in different types of industrial contaminated sediment. In addition, redundancy analysis indicated that the structure of the bacterial community in river sediments was influenced by a variety of environmental factors. TN, TP, TOC and metals (Cu, Zn and Cd) were the most important driving factors that determined the bacterial community in urban river sediments (P <0.01). According to PICRUSt analysis, the bacterial communities in different locations had similar overall functional profiles. It is worth noting that the 15 functional genes related to xenobiotics biodegradation and metabolism were the most abundant in the same location. The non-random assembly patterns of bacterial composition in different types of industrially polluted sediments were determined by a co-occurrence network. Environmental conditions resulting from different industrial pollutants may play an important role in determining their co-occurrence patterns of these bacterial taxa. Among them, the bacterial taxa involved in carbon and nitrogen cycles in module I were relatively abundant, and the bacterial taxa in module II were involved in the repair of metal pollution.Conclusions: Our data indicate that long-term potential interactions between different types of industrial pollution and taxa collectively affect the structure of the bacterial community in urban river sediments.

scholarly journals Characteristics of planktonic and sediment bacterial communities in a heavily polluted urban river

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e10866
Author(s):  
Heqing Huang ◽  
Jianhui Liu ◽  
Fanghui Zhang ◽  
Kangwen Zhu ◽  
Chunhua Yang ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Bacterial Communities ◽  
High Throughput Sequencing ◽  
Bacterial Community Composition ◽  
Urban River ◽  
Urban Rivers ◽  
Sediment Samples ◽  
Water And Sediment ◽  
Sediment Bacterial Communities ◽  
Water And Sediment Samples

Urban rivers represent a unique ecosystem in which pollution occurs regularly, altering the biogeochemical characteristics of waterbodies and sediments. However, little is presently known about the spatiotemporal patterns of planktonic and sediment bacterial community diversities and compositions in urban rivers. Herein, Illumina MiSeq high-throughput sequencing was performed to reveal the spatiotemporal dynamics of bacterial populations in Liangtan River, a heavily polluted urban river in Chongqing City (China). The results showed the richness and diversity of sediment bacteria were significantly higher than those of planktonic bacteria, whereas a strong overlap (46.7%) in OTUs was identified between water and sediment samples. Bacterial community composition remarkably differed in waters and sediments. Planktonic bacterial communities were dominated by Proteobacteria, Bacteroidetes, Cyanobacteria and Actinobacteria, while sediment bacterial communities mainly included Proteobacteria, Actinobacteria, Chloroflexi and Bacteroidetes. Additionally, several taxonomic groups of potential bacterial pathogens showed an increasing trend in water and sediment samples from residential and industrial areas (RI). Variation partition analysis (VPA) indicated that temperature and nutrient were identified as the main drivers determining the planktonic and sediment bacterial assemblages. These results highlight that bacterial communities in the polluted urban river exhibit spatiotemporal variation due to the combined influence of environmental factors associated with sewage discharge and hydropower dams.

scholarly journals Impact of long-term industrial contamination on the bacterial communities in urban river sediments

2020 ◽  
Author(s):  
Lei Zhang ◽  
Demei Tu ◽  
Xingchen Li ◽  
Wenxuan Lu ◽  
Jing Li
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Bacterial Communities ◽  
Industrial Pollution ◽  
River Sediments ◽  
Urban River ◽  
Industrial Contamination ◽  
Different Types

Abstract Background: The contamination of the aquatic environment of urban rivers with industrial wastewater has affected the abiotic conditions and biological activities of the trophic levels of the ecosystem, particularly sediments. However, most current research about microorganism in urban aquatic environments has focused on indicator bacteria related to feces and organic pollution. Meanwhile, they ignored the interactions among microorganisms. To deeply understand the impact of industrial contamination on microbial community, we study the bacterial community structure and diversity in river sediments under the influence of different types of industrial pollution by Illumina MiSeq high-throughput sequencing technology and conduct a more detailed analysis of microbial community structure through co-occurrence networks.Results: The overall community composition and abundance of individual bacterial groups differed between samples. In addition, redundancy analysis indicated that the structure of the bacterial community in river sediments was influenced by a variety of environmental factors. TN, TP, TOC and metals (Cu, Zn and Cd) were the most important driving factors that determined the bacterial community in urban river sediments (P <0.01). According to PICRUSt analysis, the bacterial communities in different locations had similar overall functional profiles. It is worth noting that the 15 functional genes related to xenobiotics biodegradation and metabolism were the most abundant in the same location. The non-random assembly patterns of bacterial composition in different types of industrially polluted sediments were determined by a co-occurrence network. Environmental conditions resulting from different industrial pollutants may play an important role in determining their co-occurrence patterns of these bacterial taxa. Among them, the bacterial taxa involved in carbon and nitrogen cycles in module I were relatively abundant, and the bacterial taxa in module II were involved in the repair of metal pollution.Conclusions: Our data indicate that long-term potential interactions between different types of industrial pollution and taxa collectively affect the structure of the bacterial community in urban river sediments.

scholarly journals Impact of long-term industrial contamination on the bacterial communities in urban river sediments

2020 ◽  
Author(s):  
lei zhang ◽  
Demei Tu ◽  
Xingchen Li ◽  
Wenxuan Lu ◽  
Jing Li
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Bacterial Communities ◽  
Industrial Pollution ◽  
River Sediments ◽  
Urban River ◽  
Industrial Contamination ◽  
Different Types

Abstract Background: The contamination of the aquatic environment of urban rivers with industrial wastewater has affected the abiotic conditions and biological activities of the trophic levels of the ecosystem, particularly sediments. However, most current research about microorganism in urban aquatic environments has focused on indicator bacteria related to feces and organic pollution. Meanwhile, they ignored the interactions among microorganisms. To deeply understand the impact of industrial contamination on microbial community, we study the bacterial community structure and diversity in river sediments under the influence of different types of industrial pollution by Illumina MiSeq high-throughput sequencing technology and conduct a more detailed analysis of microbial community structure through co-occurrence networks. Results: Although these sediment samples have a similar characteristic profile of high bacterial rank, their relative abundance was different, and there were significant differences among different locations. In addition, redundancy analysis indicated that the structure of the bacterial community in river sediments was influenced by a variety of environmental factors. TN, TP, TOC and metals (Cu, Zn and Cd) were the most important driving factors that determined the bacterial community in urban river sediments (P <0.01). According to PICRUSt analysis, the bacterial communities in different locations had similar overall functional profiles. It is worth noting that the 15 functional genes related to xenobiotics biodegradation and metabolism were the most abundant in the same location. The non-random assembly patterns of bacterial composition in different types of industrially polluted sediments were determined by a co-occurrence network. Among them, Denitratisoma, Anaeromyxobacter, and Candidatus Microthrix in the co-occurrence network were identified as keystone genera. The microbial taxa in the same module had closer ecological connections and involved carbon and nitrogen cycles as well as the repair of metal pollution. Conclusions: Our data indicate that long-term potential interactions between different types of industrial pollution and taxa collectively affect the structure of the bacterial community in urban river sediments.

scholarly journals The Urban River Syndrome: Achieving Sustainability Against a Backdrop of Accelerating Change

2021 ◽  
Vol 18 (12) ◽  
pp. 6406
Author(s):  
Martin Richardson ◽  
Mikhail Soloviev
Keyword(s):  
River Restoration ◽  
Native Species ◽  
Systems Approach ◽  
Similar Type ◽  
Urban River ◽  
Urban Rivers ◽  
River Ecology ◽  
Spatial And Temporal Scales ◽  
Natural Systems ◽  
Urban River Restoration

Human activities have been affecting rivers and other natural systems for millennia. Anthropogenic changes to rivers over the last few centuries led to the accelerating state of decline of coastal and estuarine regions globally. Urban rivers are parts of larger catchment ecosystems, which in turn form parts of wider nested, interconnected systems. Accurate modelling of urban rivers may not be possible because of the complex multisystem interactions operating concurrently and over different spatial and temporal scales. This paper overviews urban river syndrome, the accelerating deterioration of urban river ecology, and outlines growing conservation challenges of river restoration projects. This paper also reviews the river Thames, which is a typical urban river that suffers from growing anthropogenic effects and thus represents all urban rivers of similar type. A particular emphasis is made on ecosystem adaptation, widespread extinctions and the proliferation of non-native species in the urban Thames. This research emphasizes the need for a holistic systems approach to urban river restoration.

scholarly journals Urban Rivers Corridors in the Don Catchment, UK: From Ignored, Ignoble and Industrial to Green, Seen and Celebrated

2021 ◽  
Vol 13 (14) ◽  
pp. 7646
Author(s):  
Ed Shaw ◽  
Debbie Coldwell ◽  
Anthony Cox ◽  
Matt Duffy ◽  
Chris Firth ◽  
...  
Keyword(s):  
Industrial Revolution ◽  
Urban River ◽  
Urban Rivers ◽  
River Habitat ◽  
Negative Perceptions ◽  
High Degree ◽  
River Corridors ◽  
Advance Knowledge ◽  
Ecological Recovery

Research on urban rivers often seeks to find commonalities to advance knowledge of the effect of urbanisation on rivers, and rightly so. But it is important, also, to develop a complementary understanding of how urban rivers can be distinct, to facilitate a more nuanced view of concepts such as the ‘urban river syndrome’ and of the challenges facing those who wish to create more sustainable urban river corridors. To this end we use the Don Catchment as a case study to illustrate how historic patterns of urbanisation have been fundamental in shaping the catchment’s rivers. Following the Industrial Revolution, the catchment became an industrial centre, resulting in the ecological death of river ecosystems, and the disconnection of communities from stark urban river corridors. Widescale deindustrialisation in the 1970s and 1980s then resulted in a partial ecological recovery of the rivers, and ignited public interest. This history has imbued the catchment’s urban river corridors with a distinctive industrial character that can vary greatly between and within settlements. It has also left a legacy of particular issues, including a high degree of river habitat fragmentation and physical modification, and of negative perceptions of the rivers, which need improving to realise their potential as assets to local communities.

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