scholarly journals A Novel Real Time PCR Method for the Detection and Quantification of Didymella pinodella in Symptomatic and Asymptomatic Plant Hosts

2021 ◽  
Vol 8 (1) ◽  
pp. 41
Author(s):  
Adnan Šišić ◽  
Thomas Oberhänsli ◽  
Jelena Baćanović-Šišić ◽  
Pierre Hohmann ◽  
Maria Renate Finckh
Keyword(s):  
Real Time ◽  
Real Time Pcr ◽  
Root Rot ◽  
Lower Sensitivity ◽  
Sequence Alignments ◽  
Wheat Roots ◽  
Pea Root ◽  
Biomass Reduction ◽  
Pea Root Rot ◽  
Detection And Quantification

Didymella pinodella is the major pathogen of the pea root rot complex in Europe. This wide host range pathogen often asymptomatically colonizes its hosts, making the control strategies challenging. We developed a real-time PCR assay for the detection and quantification of D. pinodella based on the TEF-1 alpha gene sequence alignments. The assay was tested for specificity on a 54-isolate panel representing 35 fungal species and further validated in symptomatic and asymptomatic pea and wheat roots from greenhouse tests. The assay was highly consistent across separate qPCR reactions and had a quantification/detection limit of 3.1 pg of target DNA per reaction in plant tissue. Cross-reactions were observed with DNA extracts of five Didymella species. The risk of cross contamination, however, is low as the non-targets have not been associated with pea previously and they were amplified with at least 1000-fold lower sensitivity. Greenhouse inoculation tests revealed a high correlation between the pathogen DNA quantities in pea roots and pea root rot severity and biomass reduction. The assay also detected D. pinodella in asymptomatic wheat roots, which, despite the absence of visible root rot symptoms, caused wheat biomass reduction. This study provides new insights into the complex life style of D. pinodella and can assist in better understanding the pathogen survival and spread in the environment.

scholarly journals Biological control of Phaseolus vulgaris and Pisum sativum root rot disease using Trichoderma species

2021 ◽  
Vol 31 (1) ◽  
Author(s):  
Hammad Abdelwanees Ketta ◽  
Omar Abd El-Raouf Hewedy
Keyword(s):  
Phaseolus Vulgaris ◽  
Pisum Sativum ◽  
Common Bean ◽  
Root Rot ◽  
Fungal Pathogens ◽  
Plant Diseases ◽  
Root Rot Disease ◽  
Pea Root ◽  
Rot Disease ◽  
Pea Root Rot

Abstract Background Root rot pathogens reported to cause considerable losses in both the quality and productivity of common bean (Phaseolus vulgaris L.) and pea (Pisum sativum L.). It is an aggressive crop disease with detriment economic influence caused by Fusarium solani and Rhizoctonia solani among other soil-borne fungal pathogens. Destructive plant diseases such as root rot have been managed in the last decades using synthetic pesticides. Main body Seeking of economical and eco-friendly alternatives to combat aggressive soil-borne fungal pathogens that cause significant yield losses is urgently needed. Trichoderma emerged as promising antagonist that inhibits pathogens including those inducing root rot disease. Detailed studies for managing common bean and pea root rot disease using different Trichoderma species (T. harzianum, T. hamatum, T. viride, T. koningii, T. asperellum, T. atroviridae, T. lignorum, T. virens, T. longibrachiatum, T. cerinum, and T. album) were reported both in vitro and in vivo with promotion of plant growth and induction of systemic defense. The wide scale application of selected metabolites produced by Trichoderma spp. to induce host resistance and/or to promote crop yield, may represent a powerful tool for the implementation of integrated pest management strategies. Conclusions Biological management of common bean and pea root rot-inducing pathogens using various species of the Trichoderma fungus might have taken place during the recent years. Trichoderma species and their secondary metabolites are useful in the development of protection against root rot to bestow high-yielding common bean and pea crops.

Efficacy of Clonostachys rosea strain ACM941 and fungicide seed treatments for controlling the root rot complex of field pea

2003 ◽  
Vol 83 (3) ◽  
pp. 519-524 ◽  
Author(s):  
A. G. Xue
Keyword(s):  
Root Rot ◽  
Untreated Control ◽  
Seedling Emergence ◽  
Field Trials ◽  
Field Pea ◽  
Seed Treatments ◽  
Clonostachys Rosea ◽  
Pea Root ◽  
Pea Root Rot ◽  
Better Than

The efficacy of seed treatments with bioagent ACM941 (a strain of Clonostachys rosea), its formulated products GB116 and ACM941-Pro, and common fungicides for the control of pea root rot complex were examined in six field trials in western Canada from 1996 to 2000. The effects on seedling emergence, root rot severity, and yield varied among years. In trials 1 and 2 (1996–1997), none of the treatments significantly reduced root rot severity or increased yield. ACM941 + Thiram 75WP was the most effective treatment, increasing emergence by 17.4% and was significantly better than that of the untreated controls. In trials 3 and 4 (1997–1998), Apron FL alone and ACM941 + Apron FL were significantly better than the untreated control, increasing emergence by 6.2 and 7.7%, and yield by 10.8 and 11.5%, respectively. In trials 5 and 6 (1999–2000), AC M 941 and GB116 were equally the most effective treatments, increasing emergence by 11.5 and 12.2%, and yield by 8.2 and 6.3%, respectively. These effects were significantly greater than that of the untreated control, but not significantly different from those of Apron FL or Vitaflo-280. ACM941-Pro was developed and tested in 2000 only, and it increased emergence by 17.1% and reduced root rot severity by 29.6%. Key words: Bioagent, Clonostachys rosea, field pea, Pisum sativum, pea root rot complex (PRRC), seed treatment, fungicide

scholarly journals Detection and quantification of Streptococcus pneumoniae from Iranian patients with pneumonia and individual carriers by real time PCR

2011 ◽  
Vol 10 (60) ◽  
pp. 12826-12832 ◽  
Author(s):  
Nomanpour Bizhan ◽  
Ghodousi Arash ◽  
Babaei Toraj ◽  
AliJavad Mousavi Seyd ◽  
Asadi Soroor ◽  
...  
Keyword(s):  
Streptococcus Pneumoniae ◽  
Real Time ◽  
Real Time Pcr ◽  
Iranian Patients ◽  
Detection And Quantification

scholarly journals Detection of Peanut Allergen Traces with a Real Time PCR Assay - The Challenge to Protect Food-Allergic Consumers

2017 ◽  
Vol 7 (1) ◽  
pp. 32 ◽  
Author(s):  
Dimitra Houhoula ◽  
Stamatios Koussissis ◽  
Vladimiros Lougovois ◽  
John Tsaknis ◽  
Dimitra Kassavita ◽  
...  
Keyword(s):  
Real Time ◽  
Real Time Pcr ◽  
Rapid Detection ◽  
Food Products ◽  
Molecular Techniques ◽  
Food Allergens ◽  
Pcr Assay ◽  
Peanut Allergen ◽  
Pcr Method ◽  
Detection And Quantification

The aim of the present study was the implementation of molecular techniques in the detection and quantification of allergic substances of peanut in various kinds of food products, e.g., breakfast cereals, chocolates and biscuits that are frequently related to allergies. In some cases, the presence of peanuts can be due to contamination during production and are not declared on the label. A total of 152 samples were collected from supermarkets and were analysed by a Real Time PCR method. The results indicated that 125 samples (83,3%) were found positive in peanut traces but the most important finding is that from the 84 samples that had no allergen declaration for peanuts, 48 (57,1%) of them were found positive. In conclusion, Real Time PCR can be a very important tool for the rapid detection and quantification of food allergens.

Detection and Quantification of Human Adenoviruses in Surface Waters by Nested PCR, TaqMan Real-Time PCR and Cell Culture Assays

2007 ◽  
Vol 191 (1-4) ◽  
pp. 83-93 ◽  
Author(s):  
M. Muscillo ◽  
M. Pourshaban ◽  
M. Iaconelli ◽  
S. Fontana ◽  
A. Di Grazia ◽  
...  
Keyword(s):  
Cell Culture ◽  
Real Time ◽  
Surface Waters ◽  
Real Time Pcr ◽  
Nested Pcr ◽  
Human Adenoviruses ◽  
Detection And Quantification
Sign in / Sign up

Export Citation Format

Share Document