scholarly journals Deep/Transfer Learning with Feature Space Ensemble Networks (FeatSpaceEnsNets) and Average Ensemble Networks (AvgEnsNets) for Change Detection Using DInSAR Sentinel-1 and Optical Sentinel-2 Satellite Data Fusion

2021 ◽  
Vol 13 (21) ◽  
pp. 4394
Author(s):  
Zainoolabadien Karim ◽  
Terence L. van Zyl
Keyword(s):  
Deep Learning ◽  
Change Detection ◽  
Transfer Learning ◽  
Binary Classification ◽  
Feature Space ◽  
Fine Tuning ◽  
Urban Change ◽  
Random Initialization ◽  
Optical Imagery ◽  
Sentinel 2

Differential interferometric synthetic aperture radar (DInSAR), coherence, phase, and displacement are derived from processing SAR images to monitor geological phenomena and urban change. Previously, Sentinel-1 SAR data combined with Sentinel-2 optical imagery has improved classification accuracy in various domains. However, the fusing of Sentinel-1 DInSAR processed imagery with Sentinel-2 optical imagery has not been thoroughly investigated. Thus, we explored this fusion in urban change detection by creating a verified balanced binary classification dataset comprising 1440 blobs. Machine learning models using feature descriptors and non-deep learning classifiers, including a two-layer convolutional neural network (ConvNet2), were used as baselines. Transfer learning by feature extraction (TLFE) using various pre-trained models, deep learning from random initialization, and transfer learning by fine-tuning (TLFT) were all evaluated. We introduce a feature space ensemble family (FeatSpaceEnsNet), an average ensemble family (AvgEnsNet), and a hybrid ensemble family (HybridEnsNet) of TLFE neural networks. The FeatSpaceEnsNets combine TLFE features directly in the feature space using logistic regression. AvgEnsNets combine TLFEs at the decision level by aggregation. HybridEnsNets are a combination of FeatSpaceEnsNets and AvgEnsNets. Several FeatSpaceEnsNets, AvgEnsNets, and HybridEnsNets, comprising a heterogeneous mixture of different depth and architecture models, are defined and evaluated. We show that, in general, TLFE outperforms both TLFT and classic deep learning for the small dataset used and that larger ensembles of TLFE models do not always improve accuracy. The best performing ensemble is an AvgEnsNet (84.862%) comprised of a ResNet50, ResNeXt50, and EfficientNet B4. This was matched by a similarly composed FeatSpaceEnsNet with an F1 score of 0.001 and variance of 0.266 less. The best performing HybridEnsNet had an accuracy of 84.775%. All of the ensembles evaluated outperform the best performing single model, ResNet50 with TLFE (83.751%), except for AvgEnsNet 3, AvgEnsNet 6, and FeatSpaceEnsNet 5. Five of the seven similarly composed FeatSpaceEnsNets outperform the corresponding AvgEnsNet.

scholarly journals Assessing the Natural Recovery of Mangroves after Human Disturbance Using Neural Network Classification and Sentinel-2 Imagery in Wunbaik Mangrove Forest, Myanmar

2020 ◽  
Vol 13 (1) ◽  
pp. 52
Author(s):  
Win Sithu Maung ◽  
Jun Sasaki
Keyword(s):  
Neural Network ◽  
Change Detection ◽  
Transfer Learning ◽  
Mangrove Forest ◽  
Kappa Coefficient ◽  
Mangrove Forests ◽  
Ann Model ◽  
Shrimp Ponds ◽  
Natural Recovery ◽  
Sentinel 2

In this study, we examined the natural recovery of mangroves in abandoned shrimp ponds located in the Wunbaik Mangrove Forest (WMF) in Myanmar using artificial neural network (ANN) classification and a change detection approach with Sentinel-2 satellite images. In 2020, we conducted various experiments related to mangrove classification by tuning input features and hyper-parameters. The selected ANN model was used with a transfer learning approach to predict the mangrove distribution in 2015. Changes were detected using classification results from 2015 and 2020. Naturally recovering mangroves were identified by extracting the change detection results of three abandoned shrimp ponds selected during field investigation. The proposed method yielded an overall accuracy of 95.98%, a kappa coefficient of 0.92, mangrove and non-mangrove precisions of 0.95 and 0.98, respectively, recalls of 0.96, and F1 scores of 0.96 for the 2020 classification. For the 2015 prediction, transfer learning improved model performance, resulting in an overall accuracy of 97.20%, a kappa coefficient of 0.94, mangrove and non-mangrove precisions of 0.98 and 0.96, respectively, recalls of 0.98 and 0.97, and F1 scores of 0.96. The change detection results showed that mangrove forests in the WMF slightly decreased between 2015 and 2020. Naturally recovering mangroves were detected at approximately 50% of each abandoned site within a short abandonment period. This study demonstrates that the ANN method using Sentinel-2 imagery and topographic and canopy height data can produce reliable results for mangrove classification. The natural recovery of mangroves presents a valuable opportunity for mangrove rehabilitation at human-disturbed sites in the WMF.

scholarly journals Evaluation of Scalability and Degree of Fine-Tuning of Deep Convolutional Neural Networks for COVID-19 Screening on Chest X-ray Images Using Explainable Deep-Learning Algorithm

2020 ◽  
Vol 10 (4) ◽  
pp. 213 ◽  
Author(s):  
Ki-Sun Lee ◽  
Jae Young Kim ◽  
Eun-tae Jeon ◽  
Won Suk Choi ◽  
Nan Hee Kim ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Strategies ◽  
Transfer Learning ◽  
Learning Algorithm ◽  
Fine Tuning ◽  
Deep Convolutional Neural Networks ◽  
X Ray ◽  
Backbone Network ◽  
Deep Learning Algorithm ◽  
Chest X Ray

According to recent studies, patients with COVID-19 have different feature characteristics on chest X-ray (CXR) than those with other lung diseases. This study aimed at evaluating the layer depths and degree of fine-tuning on transfer learning with a deep convolutional neural network (CNN)-based COVID-19 screening in CXR to identify efficient transfer learning strategies. The CXR images used in this study were collected from publicly available repositories, and the collected images were classified into three classes: COVID-19, pneumonia, and normal. To evaluate the effect of layer depths of the same CNN architecture, CNNs called VGG-16 and VGG-19 were used as backbone networks. Then, each backbone network was trained with different degrees of fine-tuning and comparatively evaluated. The experimental results showed the highest AUC value to be 0.950 concerning COVID-19 classification in the experimental group of a fine-tuned with only 2/5 blocks of the VGG16 backbone network. In conclusion, in the classification of medical images with a limited number of data, a deeper layer depth may not guarantee better results. In addition, even if the same pre-trained CNN architecture is used, an appropriate degree of fine-tuning can help to build an efficient deep learning model.

scholarly journals Coal-Rock Recognition in Top Coal Caving Using Bimodal Deep Learning and Hilbert-Huang Transform

2017 ◽  
Vol 2017 ◽  
pp. 1-13 ◽  
Author(s):  
Guoxin Zhang ◽  
Zengcai Wang ◽  
Lei Zhao ◽  
Yazhou Qi ◽  
Jinshan Wang
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Acoustic Waves ◽  
Sound Pressure ◽  
Mechanical Vibration ◽  
Training Sample ◽  
Fine Tuning ◽  
Learning Method ◽  
Hilbert Huang Transform ◽  
Coal Rock

This study employs the mechanical vibration and acoustic waves of a hydraulic support tail beam for an accurate and fast coal-rock recognition. The study proposes a diagnosis method based on bimodal deep learning and Hilbert-Huang transform. The bimodal deep neural networks (DNN) adopt bimodal learning and transfer learning. The bimodal learning method attempts to learn joint representation by considering acceleration and sound pressure modalities, which both contribute to coal-rock recognition. The transfer learning method solves the problem regarding DNN, in which a large number of labeled training samples are necessary to optimize the parameters while the labeled training sample is limited. A suitable installation location for sensors is determined in recognizing coal-rock. The extraction features of acceleration and sound pressure signals are combined and effective combination features are selected. Bimodal DNN consists of two deep belief networks (DBN), each DBN model is trained with related samples, and the parameters of the pretrained DBNs are transferred to the final recognition model. Then the parameters of the proposed model are continuously optimized by pretraining and fine-tuning. Finally, the comparison of experimental results demonstrates the superiority of the proposed method in terms of recognition accuracy.

scholarly journals Deep Learning Approaches to Automated Video Classification of Upper Limb Tension Test

Healthcare ◽  
2021 ◽  
Vol 9 (11) ◽  
pp. 1579
Author(s):  
Wansuk Choi ◽  
Seoyoon Heo
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
High Performance ◽  
Model Fit ◽  
Fine Tuning ◽  
Learning Approaches ◽  
Video Classification ◽  
Video Clips ◽  
Performance Computing

The purpose of this study was to classify ULTT videos through transfer learning with pre-trained deep learning models and compare the performance of the models. We conducted transfer learning by combining a pre-trained convolution neural network (CNN) model into a Python-produced deep learning process. Videos were processed on YouTube and 103,116 frames converted from video clips were analyzed. In the modeling implementation, the process of importing the required modules, performing the necessary data preprocessing for training, defining the model, compiling, model creation, and model fit were applied in sequence. Comparative models were Xception, InceptionV3, DenseNet201, NASNetMobile, DenseNet121, VGG16, VGG19, and ResNet101, and fine tuning was performed. They were trained in a high-performance computing environment, and validation and loss were measured as comparative indicators of performance. Relatively low validation loss and high validation accuracy were obtained from Xception, InceptionV3, and DenseNet201 models, which is evaluated as an excellent model compared with other models. On the other hand, from VGG16, VGG19, and ResNet101, relatively high validation loss and low validation accuracy were obtained compared with other models. There was a narrow range of difference between the validation accuracy and the validation loss of the Xception, InceptionV3, and DensNet201 models. This study suggests that training applied with transfer learning can classify ULTT videos, and that there is a difference in performance between models.

Sar-Image Based Urban Change Detection in Bangkok, Thailand Using Deep Learning

2019 ◽  
Author(s):  
Raveerat Jaturapitpornchai ◽  
Masashi Matsuoka ◽  
Naruo Kanemoto ◽  
Shigeki Kuzuoka ◽  
Riho Ito ◽  
...  
Keyword(s):  
Deep Learning ◽  
Change Detection ◽  
Urban Change ◽  
Sar Image

scholarly journals Deep Learning for Land Cover Change Detection

2020 ◽  
Vol 13 (1) ◽  
pp. 78
Author(s):  
Oliver Sefrin ◽  
Felix M. Riese ◽  
Sina Keller
Keyword(s):  
Deep Learning ◽  
Land Cover ◽  
Change Detection ◽  
Land Cover Change ◽  
Short Term Memory ◽  
Image Sequences ◽  
Land Cover Changes ◽  
Water Classification ◽  
Land Cover Change Detection ◽  
Sentinel 2

Land cover and its change are crucial for many environmental applications. This study focuses on the land cover classification and change detection with multitemporal and multispectral Sentinel-2 satellite data. To address the challenging land cover change detection task, we rely on two different deep learning architectures and selected pre-processing steps. For example, we define an excluded class and deal with temporal water shoreline changes in the pre-processing. We employ a fully convolutional neural network (FCN), and we combine the FCN with long short-term memory (LSTM) networks. The FCN can only handle monotemporal input data, while the FCN combined with LSTM can use sequential information (multitemporal). Besides, we provided fixed and variable sequences as training sequences for the combined FCN and LSTM approach. The former refers to using six defined satellite images, while the latter consists of image sequences from an extended training pool of ten images. Further, we propose measures for the robustness concerning the selection of Sentinel-2 image data as evaluation metrics. We can distinguish between actual land cover changes and misclassifications of the deep learning approaches with these metrics. According to the provided metrics, both multitemporal LSTM approaches outperform the monotemporal FCN approach, about 3 to 5 percentage points (p.p.). The LSTM approach trained on the variable sequences detects 3 p.p. more land cover changes than the LSTM approach trained on the fixed sequences. Besides, applying our selected pre-processing improves the water classification and avoids reducing the dataset effectively by 17.6%. The presented LSTM approaches can be modified to provide applicability for a variable number of image sequences since we published the code of the deep learning models. The Sentinel-2 data and the ground truth are also freely available.

scholarly journals Automatic Generation of Aerial Orthoimages Using Sentinel-2 Satellite Imagery with a Context-Based Deep Learning Approach

2021 ◽  
Vol 11 (3) ◽  
pp. 1089
Author(s):  
Suhong Yoo ◽  
Jisang Lee ◽  
Junsu Bae ◽  
Hyoseon Jang ◽  
Hong-Gyoo Sohn
Keyword(s):  
Deep Learning ◽  
Satellite Imagery ◽  
Mean Squared Error ◽  
Similarity Index ◽  
Super Resolution ◽  
Structural Similarity ◽  
Automatic Generation ◽  
Fine Tuning ◽  
Aerial Images ◽  
Sentinel 2

Aerial images are an outstanding option for observing terrain with their high-resolution (HR) capability. The high operational cost of aerial images makes it difficult to acquire periodic observation of the region of interest. Satellite imagery is an alternative for the problem, but low-resolution is an obstacle. In this study, we proposed a context-based approach to simulate the 10 m resolution of Sentinel-2 imagery to produce 2.5 and 5.0 m prediction images using the aerial orthoimage acquired over the same period. The proposed model was compared with an enhanced deep super-resolution network (EDSR), which has excellent performance among the existing super-resolution (SR) deep learning algorithms, using the peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), and root-mean-squared error (RMSE). Our context-based ResU-Net outperformed the EDSR in all three metrics. The inclusion of the 60 m resolution of Sentinel-2 imagery performs better through fine-tuning. When 60 m images were included, RMSE decreased, and PSNR and SSIM increased. The result also validated that the denser the neural network, the higher the quality. Moreover, the accuracy is much higher when both denser feature dimensions and the 60 m images were used.

scholarly journals Deep learning prediction of mild cognitive impairment conversion to Alzheimer’s disease at 3 years after diagnosis using longitudinal and whole-brain 3D MRI

2021 ◽  
Vol 7 ◽  
pp. e560
Author(s):  
Ethan Ocasio ◽  
Tim Q. Duong
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Cognitive Impairment ◽  
Mild Cognitive Impairment ◽  
Longitudinal Data ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Fine Tuning ◽  
3D Mri ◽  
Whole Brain

Background While there is no cure for Alzheimer’s disease (AD), early diagnosis and accurate prognosis of AD may enable or encourage lifestyle changes, neurocognitive enrichment, and interventions to slow the rate of cognitive decline. The goal of our study was to develop and evaluate a novel deep learning algorithm to predict mild cognitive impairment (MCI) to AD conversion at three years after diagnosis using longitudinal and whole-brain 3D MRI. Methods This retrospective study consisted of 320 normal cognition (NC), 554 MCI, and 237 AD patients. Longitudinal data include T1-weighted 3D MRI obtained at initial presentation with diagnosis of MCI and at 12-month follow up. Whole-brain 3D MRI volumes were used without a priori segmentation of regional structural volumes or cortical thicknesses. MRIs of the AD and NC cohort were used to train a deep learning classification model to obtain weights to be applied via transfer learning for prediction of MCI patient conversion to AD at three years post-diagnosis. Two (zero-shot and fine tuning) transfer learning methods were evaluated. Three different convolutional neural network (CNN) architectures (sequential, residual bottleneck, and wide residual) were compared. Data were split into 75% and 25% for training and testing, respectively, with 4-fold cross validation. Prediction accuracy was evaluated using balanced accuracy. Heatmaps were generated. Results The sequential convolutional approach yielded slightly better performance than the residual-based architecture, the zero-shot transfer learning approach yielded better performance than fine tuning, and CNN using longitudinal data performed better than CNN using a single timepoint MRI in predicting MCI conversion to AD. The best CNN model for predicting MCI conversion to AD at three years after diagnosis yielded a balanced accuracy of 0.793. Heatmaps of the prediction model showed regions most relevant to the network including the lateral ventricles, periventricular white matter and cortical gray matter. Conclusions This is the first convolutional neural network model using longitudinal and whole-brain 3D MRIs without extracting regional brain volumes or cortical thicknesses to predict future MCI to AD conversion at 3 years after diagnosis. This approach could lead to early prediction of patients who are likely to progress to AD and thus may lead to better management of the disease.

scholarly journals Transfer Learning for Inference of Metastatic Origin from Whole Slide Histology

2021 ◽  
Author(s):  
Geoffrey F. Schau ◽  
Hassan Ghani ◽  
Erik A. Burlingame ◽  
Guillaume Thibault ◽  
Joe W. Gray ◽  
...  
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Primary Tumor ◽  
Large Scale ◽  
Metastatic Cancer ◽  
Clinical Diagnostics ◽  
Training Data ◽  
Fine Tuning ◽  
Learning Approach ◽  
Whole Slide Images

AbstractAccurate diagnosis of metastatic cancer is essential for prescribing optimal control strategies to halt further spread of metastasizing disease. While pathological inspection aided by immunohistochemistry staining provides a valuable gold standard for clinical diagnostics, deep learning methods have emerged as powerful tools for identifying clinically relevant features of whole slide histology relevant to a tumor’s metastatic origin. Although deep learning models require significant training data to learn effectively, transfer learning paradigms provide mechanisms to circumvent limited training data by first training a model on related data prior to fine-tuning on smaller data sets of interest. In this work we propose a transfer learning approach that trains a convolutional neural network to infer the metastatic origin of tumor tissue from whole slide images of hematoxylin and eosin (H&E) stained tissue sections and illustrate the advantages of pre-training network on whole slide images of primary tumor morphology. We further characterize statistical dissimilarity between primary and metastatic tumors of various indications on patch-level images to highlight limitations of our indication-specific transfer learning approach. Using a primary-to-metastatic transfer learning approach, we achieved mean class-specific areas under receiver operator characteristics curve (AUROC) of 0.779, which outperformed comparable models trained on only images of primary tumor (mean AUROC of 0.691) or trained on only images of metastatic tumor (mean AUROC of 0.675), supporting the use of large scale primary tumor imaging data in developing computer vision models to characterize metastatic origin of tumor lesions.

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