Faculty Opinions recommendation of Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy.

Author(s):  
Annette Dolphin
Nature ◽  
2009 ◽  
Vol 461 (7261) ◽  
pp. 292-295 ◽  
Author(s):  
Liguo Wang ◽  
Fred J. Sigworth

2014 ◽  
Vol 5 (3) ◽  
pp. 578-584 ◽  
Author(s):  
Ayumi Sumino ◽  
Daisuke Yamamoto ◽  
Masayuki Iwamoto ◽  
Takehisa Dewa ◽  
Shigetoshi Oiki

Biochemistry ◽  
2005 ◽  
Vol 44 (16) ◽  
pp. 6015-6023 ◽  
Author(s):  
Hoi Jong Jung ◽  
Ju Yeon Lee ◽  
Su Hwan Kim ◽  
Young-Jae Eu ◽  
Song Yub Shin ◽  
...  

2014 ◽  
Vol 106 (2) ◽  
pp. 746a
Author(s):  
Ayumi Sumino ◽  
Daisuke Yamamoto ◽  
Masayuki Iwamoto ◽  
Takehisa Dewa ◽  
Shigetoshi Oiki

2020 ◽  
Vol 117 (42) ◽  
pp. 26226-26236
Author(s):  
Alexander E. Conicella ◽  
Rui Huang ◽  
Zev A. Ripstein ◽  
Ai Nguyen ◽  
Eric Wang ◽  
...  

VCP/p97, an enzyme critical to proteostasis, is regulated through interactions with protein adaptors targeting it to specific cellular tasks. One such adaptor, p47, forms a complex with p97 to direct lipid membrane remodeling. Here, we use NMR and other biophysical methods to study the structural dynamics of p47 and p47–p97 complexes. Disordered regions in p47 are shown to be critical in directing intra-p47 and p47–p97 interactions via a pair of previously unidentified linear motifs. One of these, an SHP domain, regulates p47 binding to p97 in a manner that depends on the nucleotide state of p97. NMR and electron cryomicroscopy data have been used as restraints in molecular dynamics trajectories to develop structural ensembles for p47–p97 complexes in adenosine diphosphate (ADP)- and adenosine triphosphate (ATP)-bound conformations, highlighting differences in interactions in the two states. Our study establishes the importance of intrinsically disordered regions in p47 for the formation of functional p47–p97 complexes.


2018 ◽  
Vol 150 (5) ◽  
pp. 731-750 ◽  
Author(s):  
Malin Silverå Ejneby ◽  
Xiongyu Wu ◽  
Nina E. Ottosson ◽  
E. Peter Münger ◽  
Ingemar Lundström ◽  
...  

Dehydroabietic acid (DHAA) is a naturally occurring component of pine resin that was recently shown to open voltage-gated potassium (KV) channels. The hydrophobic part of DHAA anchors the compound near the channel’s positively charged voltage sensor in a pocket between the channel and the lipid membrane. The negatively charged carboxyl group exerts an electrostatic effect on the channel’s voltage sensor, leading to the channel opening. In this study, we show that the channel-opening effect increases as the length of the carboxyl-group stalk is extended until a critical length of three atoms is reached. Longer stalks render the compounds noneffective. This critical distance is consistent with a simple electrostatic model in which the charge location depends on the stalk length. By combining an effective anchor with the optimal stalk length, we create a compound that opens the human KV7.2/7.3 (M type) potassium channel at a concentration of 1 µM. These results suggest that a stalk between the anchor and the effector group is a powerful way of increasing the potency of a channel-opening drug.


Author(s):  
B. L. Armbruster ◽  
B. Kraus ◽  
M. Pan

One goal in electron microscopy of biological specimens is to improve the quality of data to equal the resolution capabilities of modem transmission electron microscopes. Radiation damage and beam- induced movement caused by charging of the sample, low image contrast at high resolution, and sensitivity to external vibration and drift in side entry specimen holders limit the effective resolution one can achieve. Several methods have been developed to address these limitations: cryomethods are widely employed to preserve and stabilize specimens against some of the adverse effects of the vacuum and electron beam irradiation, spot-scan imaging reduces charging and associated beam-induced movement, and energy-filtered imaging removes the “fog” caused by inelastic scattering of electrons which is particularly pronounced in thick specimens.Although most cryoholders can easily achieve a 3.4Å resolution specification, information perpendicular to the goniometer axis may be degraded due to vibration. Absolute drift after mechanical and thermal equilibration as well as drift after movement of a holder may cause loss of resolution in any direction.


Author(s):  
B.V.V. Prasad ◽  
E. Marietta ◽  
J.W. Burns ◽  
M.K. Estes ◽  
W. Chiu

Rotaviruses are spherical, double-shelled particles. They have been identified as a major cause of infantile gastroenteritis worldwide. In our earlier studies we determined the three-dimensional structures of double-and single-shelled simian rotavirus embedded in vitreous ice using electron cryomicroscopy and image processing techniques to a resolution of 40Å. A distinctive feature of the rotavirus structure is the presence of 132 large channels spanning across both the shells at all 5- and 6-coordinated positions of a T=13ℓ icosahedral lattice. The outer shell has 60 spikes emanating from its relatively smooth surface. The inner shell, in contrast, exhibits a bristly surface made of 260 morphological units at all local and strict 3-fold axes (Fig.l).The outer shell of rotavirus is made up of two proteins, VP4 and VP7. VP7, a glycoprotein and a neutralization antigen, is the major component. VP4 has been implicated in several important functions such as cell penetration, hemagglutination, neutralization and virulence. From our earlier studies we had proposed that the spikes correspond to VP4 and the rest of the surface is composed of VP7. Our recent structural studies, using the same techniques, with monoclonal antibodies specific to VP4 have established that surface spikes are made up of VP4.


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