Faculty Opinions recommendation of A consensus orthogonal partial least squares discriminant analysis (OPLS-DA) strategy for multiblock Omics data fusion.

Author(s):  
Robert Powers ◽  
Eli Riekeberg
2013 ◽  
Vol 25 (1) ◽  
pp. 50-58 ◽  
Author(s):  
Miaomiao Jiang ◽  
Chunhua Wang ◽  
Yu Zhang ◽  
Yifan Feng ◽  
Yuefei Wang ◽  
...  

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e8151 ◽  
Author(s):  
Yan-Yan Liu ◽  
Zhong-Xian Yang ◽  
Li-Min Ma ◽  
Xu-Qing Wen ◽  
Huan-Lin Ji ◽  
...  

Background Esophageal squamous cell carcinoma (ESCC) is one of the most prevalent types of upper gastrointestinal malignancies. Here, we used 1H nuclear magnetic resonance spectroscopy (1H-NMR) to identify potential serum biomarkers in patients with early stage ESCC. Methods Sixty-five serum samples from early stage ESCC patients (n = 25) and healthy controls (n = 40) were analysed using 1H-NMR spectroscopy. We distinguished between different metabolites through principal component analysis, partial least squares-discriminant analysis, and orthogonal partial least squares-discriminant analysis (OPLS-DA) using SIMCA-P+ version 14.0 software. Receiver operating characteristic (ROC) analysis was conducted to verify potential biomarkers. Results Using OPLS-DA, 31 altered serum metabolites were successfully identified between the groups. Based on the area under the ROC curve (AUROC), and the biomarker panel with AUROC of 0.969, six serum metabolites (α-glucose, choline, glutamine, glutamate, valine, and dihydrothymine) were selected as potential biomarkers for early stage ESCC. Dihydrothymine particularly was selected as a new feasible biomarker associated with tumor occurrence. Conclusions 1H-NMR spectroscopy may be a useful tumour detection approach in identifying useful metabolic ESCC biomarkers for early diagnosis and in the exploration of the molecular pathogenesis of ESCC.


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