Molecular Phylogeny of Dipterocarpaceae in Thailand Using trnL-trnF and atpB-rbcL Intergenic Spacer Region in Chloroplast DNA

2006 ◽  
Vol 9 (4) ◽  
pp. 649-653 ◽  
Author(s):  
Thalisa Yuwa-amorn ◽  
Taweerat Vichitsoont . ◽  
Morakot Tanticharoen .
2000 ◽  
Vol 23 (6) ◽  
pp. 727-730 ◽  
Author(s):  
Mareshige KOHJYOUMA ◽  
I-Jung LEE ◽  
Osamu IIDA ◽  
Kogo KURIHARA ◽  
Kazuya YAMADA ◽  
...  

Genetics ◽  
1992 ◽  
Vol 131 (1) ◽  
pp. 225-231
Author(s):  
M A Maroof ◽  
Q Zhang ◽  
D B Neale ◽  
R W Allard

Abstract Associations among alleles at nine nuclear loci and three chloroplast DNA (cpDNA) genotypes were assessed in a sample of 247 accessions of the wild barley, Hordeum vulgare ssp. spontaneum. Alleles at two of the nine nuclear loci are marked by length variations in the intergenic spacer region of ribosomal DNA (rDNA), and those of the other seven loci are well characterized allozymes. The three chloroplast DNA (cpDNA) genotypes are marked by restriction fragment length polymorphisms resulting from three polymorphic restriction sites detected by Southern blot hybridization. The analyses were performed by dividing the nine nuclear loci into a series of two-locus subsets and constructing log-linear models to characterize associations between the subsets of two nuclear loci and the cpDNA genotypes. Statistically significant associations were detected between six of the nine nuclear loci and the cpDNA genotypes, either individually as pairwise correlations, or through interaction with another nuclear locus to form three-variate complexes. Although the sample size of the present study was inadequate for statistical evaluation of higher order interactions, the results suggest the existence of interactions in which more than two nuclear loci are involved in associations with cpDNA genotypes. The observed cytonuclear associations appear to result from interplay among a number of evolutionary forces including a mating system of predominant selfing, differentiation among gene pools of local populations, and adaptation of barley genotypes to specific environmental conditions.


1997 ◽  
Vol 110 (4) ◽  
pp. 469-484 ◽  
Author(s):  
Hiroaki Setoguchi ◽  
Mikio Ono ◽  
Yoshimichi Doi ◽  
Hiroshige Koyama ◽  
Mitsuya Tsuda

HortScience ◽  
1998 ◽  
Vol 33 (3) ◽  
pp. 456d-456
Author(s):  
Rolston St. Hilaire ◽  
William R. Graves

Principal component analysis of foliar traits of hard maples (Acer saccharum Marsh. and Acer nigrum Michx. f.) near 43°N latitude clustered data into two populations composed of trees from different geographical regions. Seedlings from these two regions, and a third, geographically intermediate region, were grown in a greenhouse for 2 years with two irrigation frequencies to assess regional differences in plant development and water relations. Leaves from the most western region (west of 93°W longitude) had the highest specific mass (5.97 mg/cm2), trichome frequency (531/cm2), and stomate frequency (628/cm2). Across regions, plants irrigated frequently had more stomates (596/cm2) than plants irrigated sparsely (483/cm2). Traits similar across regions but higher with frequent irrigation included surface area and mass of lamina, shoot-to-root ratio, the ratio of lamina area to stem xylem diameter, and leaf water potential. Sparse irrigation caused a comparatively large decrease in stomatal conductance of plants from the most western region, and pressure-volume analysis showed no regional or irrigation effects on leaf osmotic potential at full turgor. Identical banding patterns resulted when Hinf I digested the PCR-amplified trnL-trnF intergenic spacer region of chloroplast DNA from each region; work with the rpL16 and ndhA introns is proceeding. Trichome frequency on abaxial leaf surfaces, which differs regionally both in nature and in controlled environments, is the most consistent character we have measured for discerning populations.


2006 ◽  
Vol 84 (5) ◽  
pp. 862-868 ◽  
Author(s):  
J.F. Bain ◽  
R.K. Jansen

The distribution of an inversion associated with a small hairpin structure in the psbA–trnH intergenic spacer region of chloroplast DNA was surveyed to determine its phylogenetic utility within the tribe Senecioneae of the Asteraceae. Over 2000 sequences were examined from a wide range of angiosperms. Although the inversion is homoplasious in a number of taxonomic groups, including the Senecioneae, it still provides useful phylogenetic information, especially when point substitutions in both the stem and loop regions are scored along with the inversion. The presence of two nested inversions within the hairpin structure allows it to be treated as a partially ordered multistate character, adding to its potential utility as a phylogenetic marker.


2009 ◽  
Vol 22 (3) ◽  
pp. 158 ◽  
Author(s):  
Adele K. Gibbs ◽  
Frank Udovicic ◽  
Andrew N. Drinnan ◽  
Pauline Y. Ladiges

Phylogenetic analysis of Eucalyptus subgenus Eudesmia is presented on the basis of the following three datasets: sequences of the internal transcribed spacer (ITS) and the external transcribed spacer (ETS) regions from nuclear rDNA, sequences of the psbA–trnH intergenic spacer region from chloroplast DNA, and morphological characters, including stamen bundling, operculum development, seeds and trichomes. Studies of floral development were essential for understanding the morphology of mature flowers and interpretation of synapomorphy and homoplasy. A summary phylogeny was constructed from a maximum parsimony analysis of those nodes coded as characters that had support in the molecular trees together with morphological characters. A revised infra-subgeneric classification is presented on the basis of the summary phylogeny, and compared with classifications of Hill and Johnson (1998) and Brooker (2000). Differences relate to relationships between clades and taxonomic rank (sections, series and subseries) and valid names of Brooker (2000) are conserved where possible. One main clade of 14 species (section Limbatae), many of mallee growth form, was found in all analyses; this clade is distributed in the South-West of Western Australia and adjacent Interzone and desert areas. A second main clade (section Complanatae) occurs in the northern and eastern tropical and subtropical regions of Australia, including Kimberley, Arnhem, Queensland and New South Wales. This section includes E. tetrodonta, previously treated as an isolated taxon in a monotypic section; however, this species is related to E. baileyana, E. similis, E. lirata and series Miniatae. The hypothesised phylogeny provides a framework for further analyses of biogeography and ecology, including functional traits.


2006 ◽  
Vol 106 (3) ◽  
pp. 297-306 ◽  
Author(s):  
A. Llorens ◽  
M.J. Hinojo ◽  
R. Mateo ◽  
M.T. González-Jaén ◽  
F.M. Valle-Algarra ◽  
...  

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