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Next generation shotgun sequencing and the challenges of de novo genome assembly
South African Journal of Science
◽
10.4102/sajs.v108i11/12.1256
◽
2012
◽
Vol 108
(11/12)
◽
Cited By ~ 1
Author(s):
Stephen Schlebusch
◽
Nicola Illing
Keyword(s):
Genome Assembly
◽
De Novo
◽
Shotgun Sequencing
◽
Next Generation
◽
De Novo Genome Assembly
Download Full-text
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De novo Genome Assembly from Next-Generation Sequencing (NGS) Reads
Next-Generation Sequencing Data Analysis
◽
10.1201/b19532-11
◽
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Keyword(s):
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Next Generation
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De Novo Genome Assembly of Next-Generation Sequencing Data
Compendium of Plant Genomes - The Brassica rapa Genome
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10.1007/978-3-662-47901-8_4
◽
2015
◽
pp. 41-51
Author(s):
Min Liu
◽
Dongyuan Liu
◽
Hongkun Zheng
Keyword(s):
Next Generation Sequencing
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Genome Assembly
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De Novo
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Next Generation Sequencing Data
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Next Generation
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De Novo Genome Assembly
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A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
PLoS ONE
◽
10.1371/journal.pone.0017915
◽
2011
◽
Vol 6
(3)
◽
pp. e17915
◽
Cited By ~ 144
Author(s):
Wenyu Zhang
◽
Jiajia Chen
◽
Yang Yang
◽
Yifei Tang
◽
Jing Shang
◽
...
Keyword(s):
Next Generation Sequencing
◽
Genome Assembly
◽
De Novo
◽
Software Tools
◽
Next Generation
◽
De Novo Genome Assembly
◽
Sequencing Technologies
◽
Generation Sequencing
◽
Assembly Software
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Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework
BMC Genomics
◽
10.1186/1471-2164-16-s12-s9
◽
2015
◽
Vol 16
(Suppl 12)
◽
pp. S9
◽
Cited By ~ 4
Author(s):
Chih-Hao Fang
◽
Yu-Jung Chang
◽
Wei-Chun Chung
◽
Ping-Heng Hsieh
◽
Chung-Yen Lin
◽
...
Keyword(s):
Next Generation Sequencing
◽
Genome Assembly
◽
De Novo
◽
Subset Selection
◽
Next Generation
◽
Mapreduce Framework
◽
De Novo Genome Assembly
◽
Generation Sequencing
◽
High Depth
◽
Selection Of
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A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes
Journal of Microbiological Methods
◽
10.1016/j.mimet.2011.06.019
◽
2011
◽
Vol 86
(3)
◽
pp. 368-375
◽
Cited By ~ 30
Author(s):
Sajeet Haridas
◽
Colette Breuill
◽
Joerg Bohlmann
◽
Tom Hsiang
Keyword(s):
Genome Assembly
◽
De Novo
◽
Sequence Data
◽
Next Generation
◽
De Novo Genome Assembly
◽
Fungal Genomes
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Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly
PLoS ONE
◽
10.1371/journal.pone.0062856
◽
2013
◽
Vol 8
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◽
pp. e62856
◽
Cited By ~ 121
Author(s):
Yen-Chun Chen
◽
Tsunglin Liu
◽
Chun-Hui Yu
◽
Tzen-Yuh Chiang
◽
Chi-Chuan Hwang
Keyword(s):
Next Generation Sequencing
◽
Genome Assembly
◽
De Novo
◽
Next Generation Sequencing Data
◽
Next Generation
◽
Sequencing Data
◽
De Novo Genome Assembly
◽
Gc Bias
◽
Generation Sequencing
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Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data
PLoS ONE
◽
10.1371/journal.pone.0060204
◽
2013
◽
Vol 8
(4)
◽
pp. e60204
◽
Cited By ~ 42
Author(s):
Aarti Desai
◽
Veer Singh Marwah
◽
Akshay Yadav
◽
Vineet Jha
◽
Kishor Dhaygude
◽
...
Keyword(s):
Next Generation Sequencing
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Genome Assembly
◽
De Novo
◽
Sequencing Depth
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Next Generation Sequencing Data
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Next Generation
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Sequencing Data
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De Novo Genome Assembly
◽
Generation Sequencing
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Microsatellite loci and the complete mitochondrial DNA sequence characterized through next generation sequencing and de novo genome assembly for the critically endangered orange-bellied parrot, Neophema chrysogaster
Molecular Biology Reports
◽
10.1007/s11033-012-1950-z
◽
2012
◽
Vol 40
(1)
◽
pp. 35-42
◽
Cited By ~ 23
Author(s):
Adam D. Miller
◽
Robert T. Good
◽
Rhys A. Coleman
◽
Melanie L. Lancaster
◽
Andrew R. Weeks
Keyword(s):
Mitochondrial Dna
◽
Next Generation Sequencing
◽
Dna Sequence
◽
Genome Assembly
◽
Microsatellite Loci
◽
De Novo
◽
Critically Endangered
◽
Next Generation
◽
De Novo Genome Assembly
◽
Generation Sequencing
Download Full-text
High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly
Journal of Microbiological Methods
◽
10.1016/j.mimet.2013.06.006
◽
2013
◽
Vol 95
(3)
◽
pp. 441-447
◽
Cited By ~ 5
Author(s):
Rommel Thiago Jucá Ramos
◽
Adriana Ribeiro Carneiro
◽
Siomar de Castro Soares
◽
Silvanira Barbosa
◽
Leonardo Varuzza
◽
...
Keyword(s):
Next Generation Sequencing
◽
Genome Assembly
◽
High Efficiency
◽
De Novo
◽
Corynebacterium Pseudotuberculosis
◽
Next Generation
◽
De Novo Genome Assembly
◽
Generation Sequencing
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Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly
PLoS ONE
◽
10.1371/journal.pone.0069503
◽
2013
◽
Vol 8
(7)
◽
pp. e69503
◽
Cited By ~ 8
Author(s):
Tsunglin Liu
◽
Cheng-Hung Tsai
◽
Wen-Bin Lee
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Jung-Hsien Chiang
Keyword(s):
Next Generation Sequencing
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Genome Assembly
◽
De Novo
◽
Next Generation
◽
De Novo Genome Assembly
◽
Next Generation Sequencing Ngs
◽
Generation Sequencing
Download Full-text
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