Sequencing and phylogenetic characterization of a novel RNA virus in Arma chinensis

2021 ◽  
Vol 65 (03) ◽  
pp. 320-323
Author(s):  
Yonghao Dong ◽  
Pengjun Xu ◽  
Guangwei Ren ◽  
Changchun Feng ◽  
Dongyang Liu ◽  
...  
Keyword(s):  
Rna Virus ◽  
Phylogenetic Characterization

Sequencing and phylogenetic characterization of a novel RNA virus genome from Harmonia axyridis

2020 ◽  
Vol 47 (5) ◽  
pp. 4015-4019
Author(s):  
Yingjie Liu ◽  
Guangwei Ren ◽  
Lianqiang Jiang ◽  
Changchun Feng ◽  
Dongyang Liu ◽  
...  
Keyword(s):  
Harmonia Axyridis ◽  
Rna Virus ◽  
Virus Genome ◽  
Phylogenetic Characterization

DETECTION AND PHYLOGENETIC CHARACTERIZATION OF HEPATITIS E VIRUS GENOTYPE 3 IN A CAPTIVE WILD BOAR IN THAILAND

2012 ◽  
Vol 43 (3) ◽  
pp. 640-644 ◽  
Author(s):  
Anuwat Wiratsudakul ◽  
Ladawan Sariya ◽  
Phirom Prompiram ◽  
Siriporn Tantawet ◽  
Duangkhamol Suraruangchai ◽  
...  
Keyword(s):  
Wild Boar ◽  
Hepatitis E Virus ◽  
Hepatitis E ◽  
Genotype 3 ◽  
Virus Genotype ◽  
Phylogenetic Characterization

Characterization of a novel Sclerotinia sclerotiorum RNA virus as the prototype of a new proposed family within the order Tymovirales

2016 ◽  
Vol 219 ◽  
pp. 92-99 ◽  
Author(s):  
Kunfei Li ◽  
Dan Zheng ◽  
Jiasen Cheng ◽  
Tao Chen ◽  
Yanping Fu ◽  
...  
Keyword(s):  
Sclerotinia Sclerotiorum ◽  
Rna Virus

Molecular characterization of a novel mycovirus isolated from Rhizoctonia solani AG-1 IA 9-11

2021 ◽  
Author(s):  
Yang Sun ◽  
Yan qiong Li ◽  
Wen han Dong ◽  
Ai li Sun ◽  
Ning wei Chen ◽  
...  
Keyword(s):  
Rhizoctonia Solani ◽  
Rna Virus ◽  
Dsrna Virus ◽  
Open Reading Frames ◽  
The Family ◽  
Significant Amino Acid Sequence ◽  
Overlapping Open Reading Frames ◽  
Significant Amino Acid ◽  
Reading Frames

Abstract The complete genome of the dsRNA virus isolated from Rhizoctonia solani AG-1 IA 9–11 (designated as Rhizoctonia solani dsRNA virus 11, RsRV11 ) were determined. The RsRV11 genome was 9,555 bp in length, contained three conserved domains, SMC, PRK and RT-like super family, and encoded two non-overlapping open reading frames (ORFs). ORF1 potentially coded for a 204.12 kDa predicted protein, which shared low but significant amino acid sequence identities with the putative protein encoded by Rhizoctonia solani RNA virus HN008 (RsRV-HN008) ORF1. ORF2 potentially coded for a 132.41 kDa protein which contained the conserved motifs of the RNA-dependent RNA polymerase (RdRp). Phylogenetic analysis indicated that RsRV11 was clustered with RsRV-HN008 in a separate clade independent of other virus families. It implies that RsRV11, along with RsRV-HN008 possibly a new fungal virus taxa closed to the family Megabirnaviridae, and RsRV11 is a new member of mycoviruses.

scholarly journals Molecular characterization of an unusual new plant RNA virus reveals an evolutionary link between two different virus families

PLoS ONE ◽  
2018 ◽  
Vol 13 (10) ◽  
pp. e0206382 ◽  
Author(s):  
Sun-Jung Kwon ◽  
Gug-Seoun Choi ◽  
Boram Choi ◽  
Jang-Kyun Seo
Keyword(s):  
Molecular Characterization ◽  
Rna Virus

scholarly journals Las degradation in a fluidized bed reactor and phylogenetic characterization of the biofilm

2013 ◽  
Vol 30 (3) ◽  
pp. 521-529 ◽  
Author(s):  
L. L. Oliveira ◽  
R. B. Costa ◽  
I. K. Sakamoto ◽  
I. C. S. Duarte ◽  
E. L. Silva ◽  
...  
Keyword(s):  
Fluidized Bed ◽  
Fluidized Bed Reactor ◽  
Phylogenetic Characterization

scholarly journals Molecular epidemiology of blaCTX-M gene-producing uropathogenic Escherichia coli among Iranian kidney transplant patients: clonal dissemination of CC131 and CC10

2021 ◽  
Vol 20 (1) ◽  
Author(s):  
Mehrdad Halaji ◽  
Shahrzad Shahidi ◽  
Behrooz Ataei ◽  
Abdolamir Atapour ◽  
Awat Feizi ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Kidney Transplant ◽  
Phylogenetic Group ◽  
Control Group ◽  
M Gene ◽  
Mlst Analysis ◽  
Phylogenetic Characterization ◽  
Transplant Patients ◽  
Kidney Transplant Patients

Abstract Background This study aimed to investigate the phylogenetic characterization and virulence traits of uropathogenic Escherichia coli (UPEC) isolated from kidney transplant patients (KTPs) as well as non-KTPs and analyze the clonal distribution of Extended spectrum β-lactamases (ESBLs)-producing UPEC containing blaCTX-M gene. Methods To this end, we determined virulence marker and the phylogenetic characterization of UPEC in non-KTPs (n = 65) and KTPs (n = 46). The non-KTPs were considered the control group of the study. Also, according to the Achtman scheme, we performed multilocus sequence typing to assess the relationship between twenty-nine of ESBL-producing isolates containing blaCTX-M gene. Results According to the results of PCR assay, the prevalence of virulence factor genes ranged from 0% (cnf and papG III) to 93.7% (fimH). Also, KTP isolates significantly differed from non-KTP isolates only in terms of the prevalence of pap GI elements. Moreover, the most frequent UPEC isolates were in phylogenetic group B2, followed by group D (18.9%), and group A (13.5%). Furthermore, except for phylogenetic group C, there was no significant correlation between phylogenetic distribution in KTPs and non-KTPs. Additionally, MLST analysis of blaCTX-M carrying isolates identified 18 unique sequence types (ST) the most common of which was ST131 (24.1%), followed by ST1193 (10.3%), while fourteen STs were detected only once. Conclusions The results further revealed significant differences between the UPEC isolates from KTPs and non-KTPs regarding the phylogroups C and PAI gene. Based on MLST analysis, we also observed a relatively high diversity in UPEC isolates obtained from KTPs and non-KTPs. Moreover, clonal complex (CC) 131 and ST131 were found to be the most prevalent clones and ST types, respectively. Besides, for the first time, ST8503 were reported in KTPs. These results suggested regular studies on characterization of UPEC isolates among KTPs.

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