Using the improved position specific scoring matrix and ensemble learning method to predict drug-binding residues from protein sequences

Juan Li; Yongqing Zhang; Wenli Qin; Yanzhi Guo; Lezheng Yu; Xuemei Pu; Menglong Li; Jing Sun

doi:10.4236/ns.2012.45043

Using the improved position specific scoring matrix and ensemble learning method to predict drug-binding residues from protein sequences

Natural Science ◽

10.4236/ns.2012.45043 ◽

2012 ◽

Vol 04 (05) ◽

pp. 304-312 ◽

Cited By ~ 1

Author(s):

Juan Li ◽

Yongqing Zhang ◽

Wenli Qin ◽

Yanzhi Guo ◽

Lezheng Yu ◽

...

Keyword(s):

Ensemble Learning ◽

Protein Sequences ◽

Drug Binding ◽

Position Specific Scoring Matrix ◽

Learning Method ◽

Scoring Matrix ◽

Binding Residues

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Protein Remote Homology Detection by Combining Pseudo Dimer Composition with an Ensemble Learning Method

Current Proteomics ◽

10.2174/157016461302160514002939 ◽

2016 ◽

Vol 13 (2) ◽

pp. 86-91 ◽

Cited By ~ 7

Author(s):

Bin Liu ◽

Junjie Chen ◽

Shanyi Wang

Keyword(s):

Ensemble Learning ◽

Learning Method ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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A Deep Learning based Ensemble Learning Method for Epileptic Seizure Prediction

Computers in Biology and Medicine ◽

10.1016/j.compbiomed.2021.104710 ◽

2021 ◽

pp. 104710

Author(s):

Syed Muhammad Usman ◽

Shehzad Khalid ◽

Sadaf Bashir

Keyword(s):

Deep Learning ◽

Ensemble Learning ◽

Epileptic Seizure ◽

Learning Method ◽

Seizure Prediction ◽

Epileptic Seizure Prediction

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Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics ◽

10.1016/j.bbapap.2012.12.015 ◽

2013 ◽

Vol 1834 (4) ◽

pp. 717-724 ◽

Cited By ~ 11

Author(s):

Dominique Koua ◽

Silja Laht ◽

Lauris Kaplinski ◽

Reto Stöcklin ◽

Maido Remm ◽

...

Keyword(s):

Markov Model ◽

Hidden Markov Model ◽

Hidden Markov ◽

Position Specific Scoring Matrix ◽

Scoring Matrix

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HEMEsPred: Structure-Based Ligand-Specific Heme Binding Residues Prediction by Using Fast-Adaptive Ensemble Learning Scheme

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2016.2615010 ◽

2018 ◽

Vol 15 (1) ◽

pp. 147-156 ◽

Cited By ~ 4

Author(s):

Jian Zhang ◽

Haiting Chai ◽

Bo Gao ◽

Guifu Yang ◽

Zhiqiang Ma

Keyword(s):

Ensemble Learning ◽

Heme Binding ◽

Learning Scheme ◽

Binding Residues

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Interpretable Multi-modal Stacking-based Ensemble Learning Method for Real Estate Appraisal

IEEE Transactions on Multimedia ◽

10.1109/tmm.2021.3126153 ◽

2021 ◽

pp. 1-1

Author(s):

Sutong Wang ◽

Jiacheng Zhu ◽

Yunqiang Yin ◽

Dujuan Wang ◽

T.C. Edwin Cheng ◽

...

Keyword(s):

Real Estate ◽

Ensemble Learning ◽

Learning Method ◽

Real Estate Appraisal

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Two-stage stacking heterogeneous ensemble learning method for gasoline octane number loss prediction

Applied Soft Computing ◽

10.1016/j.asoc.2021.107989 ◽

2021 ◽

pp. 107989

Author(s):

Shaoze Cui ◽

Huaxin Qiu ◽

Sutong Wang ◽

Yanzhang Wang

Keyword(s):

Ensemble Learning ◽

Octane Number ◽

Learning Method ◽

Two Stage ◽

Loss Prediction ◽

Heterogeneous Ensemble

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Early Detection of Lung Cancer Through Breath Analysis Using AdaBoost Ensemble Learning Method

10.1109/access51619.2021.9563337 ◽

2021 ◽

Author(s):

V A Binson ◽

M Subramoniam ◽

G K Ragesh ◽

Ajay Kumar

Keyword(s):

Lung Cancer ◽

Early Detection ◽

Ensemble Learning ◽

Breath Analysis ◽

Learning Method

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Classification and prediction model of compound pharmacokinetic properties based on ensemble learning method

10.1145/3500931.3501021 ◽

2021 ◽

Author(s):

Jiayi Zhao ◽

Yang Liu

Keyword(s):

Prediction Model ◽

Ensemble Learning ◽

Learning Method ◽

Pharmacokinetic Properties

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Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins

Bioinformatics ◽

10.1093/bioinformatics/bty912 ◽

2018 ◽

Vol 35 (11) ◽

pp. 1844-1851 ◽

Cited By ~ 6

Author(s):

Loris Nanni ◽

Sheryl Brahnam

Keyword(s):

Dna Binding ◽

Binding Proteins ◽

3D Structure ◽

Dna Binding Proteins ◽

Position Specific Scoring Matrix ◽

Scoring Matrix

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Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM

Proceedings of the third annual international conference on Computational molecular biology - RECOMB '99 ◽

10.1145/299432.299486 ◽

1999 ◽

Cited By ~ 17

Author(s):

Lawrence A. Kelley ◽

Robert M. MacCallum ◽

Michael J. E. Sternberg

Keyword(s):

Three Dimensional ◽

Position Specific Scoring Matrix ◽

Scoring Matrix

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