Genetic diversity and structure of natural Dactylis glomerata L. populations revealed by morphological and microsatellite-based (SSR/ISSR) markers

Several morphological and agronomic traits and the genetic diversity of nine Dactylis glomerata L. populations collected throughout Sicily (semi-arid Mediterranean environment) were evaluated for two successive years. Significant differences were recorded for morphological traits (plant height, leaf length, leaf width). In relation to the measurement of summer dormancy, the results suggest the expression of different levels of dormancy (completely dormant, semi-dormant, and non-dormant). For biomass yield, some Sicilian populations (SD63 and SD56) characterised by low levels of summer dormancy show production levels similar to the summer-active control varieties (Medly and Porto). However, SD46, with a much higher level of dormancy, gave biomass yield higher than the summer-dormant control variety (Kasbah). The genetic diversity evaluated by fAFLP analysis confirms the observed morphological and agronomic variability.

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Genetic Diversity and Structure of the Korean Rare and Endemic Species, Deutzia pdaniculata Nakai, as Revealed by ISSR Markers

Korean Journal of Plant Resources ◽

10.7732/kjpr.2013.26.5.619 ◽

2013 ◽

Vol 26 (5) ◽

pp. 619-627

Author(s):

Sung-Won Son ◽

Kyoung Su Choi ◽

Kyu Tae Park ◽

Eun-Hye Kim ◽

Seon Joo Park

Keyword(s):

Genetic Diversity ◽

Endemic Species ◽

Issr Markers ◽

Genetic Diversity And Structure

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Comparing the efficiency of sampling strategies to establish a representative in the phenotypic-based genetic diversity core collection of orchardgrass (Dactylis glomerata L.)

Czech Journal of Genetics and Plant Breeding ◽

10.17221/9/2012-cjgpb ◽

2013 ◽

Vol 49 (No. 1) ◽

pp. 36-47 ◽

Cited By ~ 4

Author(s):

M. Studnicki ◽

W. Mądry ◽

J. Schmidt

Keyword(s):

Genetic Diversity ◽

Core Collection ◽

Dactylis Glomerata ◽

Sampling Strategy ◽

Sampling Strategies ◽

Core Collections ◽

The Core ◽

Entire Collection ◽

The Mean ◽

Dactylis Glomerata L

Establishing a core collection that represents the genetic diversity of the entire collection with a minimum loss of its original diversity and minimal redundancies is an important problem for gene bank curators and crop breeders. In this paper, we assess the representativeness of the original genetic diversity in core collections consisting of one-tenth of the entire collection obtained according to 23 sampling strategies. The study was performed using the Polish orchardgrass Dactylis glomerata L. germplasm collection as a model. The representativeness of the core collections was validated by the difference of means (MD%) and difference of mean squared Euclidean distance (d‒D%) for the studied traits in the core subsets and the entire collection. In this way, we compared the efficiency of a simple random and 22 (20 cluster-based and 2 direct cluster-based) stratified sampling strategies. Each cluster-based stratified sampling strategy is a combination of 2 clusterings, 5 allocations and 2 methods of sampling in a group. We used the accession genotypic predicted values for 8 quantitative traits tested in field trials. A sampling strategy is considered more effective for establishing core collections if the means of the traits in a core are maintained at the same level as the means in the entire collection (i.e., the mean of MD% in the simulated samples is close to zero) and, simultaneously, when the overall variation in a core collection is greater than in the entire collection (i.e., the mean of d‒D% in the simulated samples is greater than that obtained for the simple random sampling strategy). Both cluster analyses (unweighted pair group method with arithmetic mean UPGMA and Ward) were similarly useful in constructing those sampling strategies capable of establishing representative core collections. Among the allocation methods that are relatively most useful for constructing efficient samplings were proportional and D2 (including variation). Within the Ward clusters, the random sampling was better than the cluster-based sampling, but not within the UPGMA clusters.

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The population genetic structure and diversification of Aristolochia delavayi (Aristolochiaceae), an endangered species of the dry hot valleys of the Jinsha River, southwestern China

Botany ◽

10.1139/cjb-2013-0267 ◽

2014 ◽

Vol 92 (8) ◽

pp. 579-587 ◽

Cited By ~ 7

Author(s):

Zhi-Yun Yang ◽

Ting-Shuang Yi ◽

Liang-Qin Zeng ◽

Xun Gong

Keyword(s):

Genetic Diversity ◽

Endangered Species ◽

Population Size ◽

Gene Diversity ◽

Issr Markers ◽

Habitat Destruction ◽

Ex Situ ◽

Southwestern China ◽

Jinsha River ◽

Genetic Diversity And Structure

Aristolochia delavayi Franch. is an endangered species of the dry hot valleys of the Jinsha River, southwestern China. The genetic diversity and structure of the species and the occurrence of gene flow were investigated with eight inter-simple sequence repeat (ISSR) markers and four plastid loci (matK, trnL-trnT, rps4-trnT, and trnC-rpoB). The analysis of ISSR markers indicated that the genetic diversity of the species is relatively high (PPB = 84.71%). Similarly, a high gene diversity of HT = 0.833 was found based on the four plastid loci. It is possible that this species previously maintained a large effective population size and that the current relict distribution of the species is a result of large-scale fragmentation and habitat destruction. The origin of the species at approximately 3.407 million years ago and the ensuing intraspecific divergence are generally consistent with the history of two major glaciations in this region. Conservation measures are urgently needed to increase the genetic diversity and population size of this species through both in- and ex-situ action.

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