Study distinguishes structure and function of catalytically active sites on copper that reduce CO₂

2021 ◽  
pp. 5-5
Author(s):  
Mitch Jacoby
2019 ◽  
Vol 116 (10) ◽  
pp. 4037-4043 ◽  
Author(s):  
Maria I. Freiberger ◽  
A. Brenda Guzovsky ◽  
Peter G. Wolynes ◽  
R. Gonzalo Parra ◽  
Diego U. Ferreiro

Conflicting biological goals often meet in the specification of protein sequences for structure and function. Overall, strong energetic conflicts are minimized in folded native states according to the principle of minimal frustration, so that a sequence can spontaneously fold, but local violations of this principle open up the possibility to encode the complex energy landscapes that are required for active biological functions. We survey the local energetic frustration patterns of all protein enzymes with known structures and experimentally annotated catalytic residues. In agreement with previous hypotheses, the catalytic sites themselves are often highly frustrated regardless of the protein oligomeric state, overall topology, and enzymatic class. At the same time a secondary shell of more weakly frustrated interactions surrounds the catalytic site itself. We evaluate the conservation of these energetic signatures in various family members of major enzyme classes, showing that local frustration is evolutionarily more conserved than the primary structure itself.


Inorganics ◽  
2020 ◽  
Vol 8 (8) ◽  
pp. 44
Author(s):  
Carola S. Seelmann ◽  
Max Willistein ◽  
Johann Heider ◽  
Matthias Boll

Tungsten is the heaviest element used in biological systems. It occurs in the active sites of several bacterial or archaeal enzymes and is ligated to an organic cofactor (metallopterin or metal binding pterin; MPT) which is referred to as tungsten cofactor (Wco). Wco-containing enzymes are found in the dimethyl sulfoxide reductase (DMSOR) and the aldehyde:ferredoxin oxidoreductase (AOR) families of MPT-containing enzymes. Some depend on Wco, such as aldehyde oxidoreductases (AORs), class II benzoyl-CoA reductases (BCRs) and acetylene hydratases (AHs), whereas others may incorporate either Wco or molybdenum cofactor (Moco), such as formate dehydrogenases, formylmethanofuran dehydrogenases or nitrate reductases. The obligately tungsten-dependent enzymes catalyze rather unusual reactions such as ones with extremely low-potential electron transfers (AOR, BCR) or an unusual hydration reaction (AH). In recent years, insights into the structure and function of many tungstoenzymes have been obtained. Though specific and unspecific ABC transporter uptake systems have been described for tungstate and molybdate, only little is known about further discriminative steps in Moco and Wco biosynthesis. In bacteria producing Moco- and Wco-containing enzymes simultaneously, paralogous isoforms of the metal insertase MoeA may be specifically involved in the molybdenum- and tungsten-insertion into MPT, and in targeting Moco or Wco to their respective apo-enzymes. Wco-containing enzymes are of emerging biotechnological interest for a number of applications such as the biocatalytic reduction of CO2, carboxylic acids and aromatic compounds, or the conversion of acetylene to acetaldehyde.


1978 ◽  
Vol 56 (6) ◽  
pp. 654-658 ◽  
Author(s):  
William W.-C. Chan ◽  
Caroline A. Enns

Aspartate transcarbamoylase from Escherichia coli is composed of six catalytic (c) and six regulatory (r) polypeptides. We have studied the structure and function of this enzyme using chymotrypsin as a probe. The protease inactivates the isolated catalytic subunit (c3) but has no effects on the native enzyme (c6r6). Under identical conditions, the c3r6 complex is inactivated at a much slower rate than c3. The presence of the substrate analogue succinate together with carbamoyl phosphate reduces substantially the rate of inactivation. Extended exposure to chymotrypsin converts the catalytic subunit into a partially active derivative with a fourfold higher Michaelis constant. This derivative is indistinguishable from the unmodified catalytic subunit in gel electrophoresis under nondenaturing conditions. However, in the presence of sodium dodecyl sulfate, the major fragment in the electropherogram is smaller than that of the intact catalytic polypeptide. The results could be explained by postulating the presence of a chymotrypsin-sensitive peptide bond at or near the active site. Since X-ray crystallographic studies have indicated that the active sites are located in a central cavity, the resistance of the native enzyme towards inactivation may be due to the inability of chymotrypsin to enter this cavity.


Author(s):  
Henriks Zenkevičs ◽  
Ilze Vosekalna ◽  
Vija Vose

Significance of arginine radicals for sturgeon gonadotropin secondary structure and function Guanidine groups of arginine side chains were selectively chemically modified with 1,2-cyclohexanedione (CHD) in sturgeon (Acipenser güldenstädti Br.) gonadotropic hormone (GTH) and in its subunits. It was found that only two of the six guanidines were accessible for the reagent and each of the two modified groups was bound to an individual subunit. The results showed that both modified groups were located on the surface of the hormone dimeric molecule. CD-spectroscopy of the modified hormonal preparations did not indicate any considerable changes in their secondary structure. On the basis of the data obtained, a conclusion was made that the free guanidine groups are of exclusive importance for the hormone function at the receptor level as the bearers of the positive charge in the functionally important active sites or effector zones located on the surface of the hormone molecule. Also, it was shown that the guanidine groups played a certain role in sustaining the functionally effective spatial structure of the subunits and GTH.


2017 ◽  
Vol 2017 ◽  
pp. 1-17 ◽  
Author(s):  
L. Tirinato ◽  
F. Pagliari ◽  
T. Limongi ◽  
M. Marini ◽  
A. Falqui ◽  
...  

For decades, lipid droplets have been considered as the main cellular organelles involved in the fat storage, because of their lipid composition. However, in recent years, some new and totally unexpected roles have been discovered for them: (i) they are active sites for synthesis and storage of inflammatory mediators, and (ii) they are key players in cancer cells and tissues, especially in cancer stem cells. In this review, we summarize the main concepts related to the lipid droplet structure and function and their involvement in inflammatory and cancer processes.


Biochemistry ◽  
1995 ◽  
Vol 34 (34) ◽  
pp. 10764-10770 ◽  
Author(s):  
Derya H. Ozturk ◽  
Ryan H. Dorfman ◽  
Giovanna Scapin ◽  
James C. Sacchettini ◽  
Charles Grubmeyer

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