scholarly journals Review of Wang et al Assessing the value of BGC Argo profiles versus ocean colour observations for biogeochemical model optimization in the Gulf of Mexico

2020 ◽  
Author(s):  
Mara Freilich
2020 ◽  
Author(s):  
Bin Wang ◽  
Katja Fennel ◽  
Liuqian Yu ◽  
Christopher Gordon

Abstract. Biogeochemical ocean models are useful tools subject to uncertainties arising from simplifications, inaccurate parameterization of processes, and poorly known model parameters. Parameter optimization is a standard method for addressing the latter but typically cannot constrain all biogeochemical parameters because of insufficient observations. Here we assess the trade-offs between satellite observations of ocean colour and biogeochemical (BGC) Argo profiles, and the benefits of combining both observation types, for optimizing biogeochemical parameters in a model of the Gulf of Mexico. A suite of optimization experiments is carried out using different combinations of satellite chlorophyll and profile measurements of chlorophyll, phytoplankton biomass, and particulate organic carbon (POC) from autonomous floats. As parameter optimization in 3D models is computationally expensive, we optimize the parameters in a 1D model version, and then perform 3D simulations using these parameters. We show first that the use of parameters optimized in 1D improves the skill of the 3D model. Parameters that are only optimized with respect to surface chlorophyll cannot reproduce subsurface distributions of biological fields. Adding profiles of chlorophyll in the parameter optimization yields significant improvements for surface and subsurface chlorophyll but does not accurately capture subsurface phytoplankton and POC distributions because the parameter for the maximum ratio of chlorophyll to phytoplankton carbon is not well constrained in that case. Using all available observations leads to significant improvements of both observed (chlorophyll, phytoplankton, and POC) and unobserved variables (e.g. primary production). Our results highlight the significant benefits of BGC Argo measurements for biogeochemical parameter optimization and model calibration.


2021 ◽  
Author(s):  
Bin Wang ◽  
Katja Fennel ◽  
Liuqian Yu

Abstract. Given current threats to ocean ecosystem health, there is a growing demand for accurate biogeochemical hindcasts, nowcasts, and predictions. Provision of such products requires data assimilation, i.e., a comprehensive strategy for incorporating observations into biogeochemical models, but current data streams of biogeochemical observations are generally considered insufficient for the operational provision of such products. This study investigates to what degree the satellite observations in combination with sparse BGC Argo profiles can improve subsurface biogeochemical properties. The multivariate Deterministic Ensemble Kalman Filter (DEnKF) has been implemented to assimilate physical and biological observations into a biogeochemical model of the Gulf of Mexico. First, the biogeochemical model component was tuned using BGC-Argo observations. Then, observations of sea surface height, sea surface temperature, and surface chlorophyll were assimilated, and profiles of both physical and biological variables were updated based on the surface information. We assessed whether this leads to improved subsurface distributions, especially of biological properties, using observations from five BGC-Argo floats that were not assimilated, but used in the a priori tuning. Results show that assimilation of the satellite data improves model representation of major circulation features, which translate into improved three-dimensional distributions of temperature and salinity. The multivariate assimilation also improves the agreement of subsurface nitrate through its tight correlation with temperature, but the improvements in subsurface chlorophyll were modest initially due to suboptimal choices of the model’s optical module. Repeating the assimilation run after adjusting light attenuation parameterization through further a priori tuning greatly improved the subsurface distribution of chlorophyll. Therefore, even sparse BGC-Argo observations can provide substantial benefits to biogeochemical prediction by enabling a priori model tuning. Given that, so far, the abundance of BGC-Argo profiles in the Gulf of Mexico and elsewhere is insufficient for sequential assimilation, updating 3D biological properties in a model that has been well calibrated is an intermediate step toward full assimilation of the new data types.


2020 ◽  
Vol 17 (15) ◽  
pp. 4059-4074
Author(s):  
Bin Wang ◽  
Katja Fennel ◽  
Liuqian Yu ◽  
Christopher Gordon

Abstract. Biogeochemical ocean models are useful tools but subject to uncertainties arising from simplifications, inaccurate parameterization of processes, and poorly known model parameters. Parameter optimization is a standard method for addressing the latter but typically cannot constrain all biogeochemical parameters because of insufficient observations. Here we assess the trade-offs between satellite observations of ocean color and biogeochemical (BGC) Argo profiles and the benefits of combining both observation types for optimizing biogeochemical parameters in a model of the Gulf of Mexico. A suite of optimization experiments is carried out using different combinations of satellite chlorophyll and profile measurements of chlorophyll, phytoplankton biomass, and particulate organic carbon (POC) from autonomous floats. As parameter optimization in 3D models is computationally expensive, we optimize the parameters in a 1D model version and then perform 3D simulations using these parameters. We show first that the use of optimal 1D parameters, with a few modifications, improves the skill of the 3D model. Parameters that are only optimized with respect to surface chlorophyll cannot reproduce subsurface distributions of biological fields. Adding profiles of chlorophyll in the parameter optimization yields significant improvements for surface and subsurface chlorophyll but does not accurately capture subsurface phytoplankton and POC distributions because the parameter for the maximum ratio of chlorophyll to phytoplankton carbon is not well constrained in that case. Using all available observations leads to significant improvements of both observed (chlorophyll, phytoplankton, and POC) and unobserved (e.g., primary production) variables. Our results highlight the significant benefits of BGC-Argo measurements for biogeochemical parameter optimization and model calibration.


2017 ◽  
Vol 44 (2) ◽  
pp. 946-956 ◽  
Author(s):  
Arnaud Laurent ◽  
Katja Fennel ◽  
Wei‐Jun Cai ◽  
Wei‐Jen Huang ◽  
Leticia Barbero ◽  
...  

2018 ◽  
Vol 15 (11) ◽  
pp. 3561-3576 ◽  
Author(s):  
Fabian A. Gomez ◽  
Sang-Ki Lee ◽  
Yanyun Liu ◽  
Frank J. Hernandez Jr. ◽  
Frank E. Muller-Karger ◽  
...  

Abstract. Biogeochemical models that simulate realistic lower-trophic-level dynamics, including the representation of main phytoplankton and zooplankton functional groups, are valuable tools for improving our understanding of natural and anthropogenic disturbances in marine ecosystems. Previous three-dimensional biogeochemical modeling studies in the northern and deep Gulf of Mexico (GoM) have used only one phytoplankton and one zooplankton type. To advance our modeling capability of the GoM ecosystem and to investigate the dominant spatial and seasonal patterns of phytoplankton biomass, we configured a 13-component biogeochemical model that explicitly represents nanophytoplankton, diatoms, micro-, and mesozooplankton. Our model outputs compare reasonably well with observed patterns in chlorophyll, primary production, and nutrients over the Louisiana–Texas shelf and deep GoM region. Our model suggests silica limitation of diatom growth in the deep GoM during winter and near the Mississippi delta during spring. Model nanophytoplankton growth is weakly nutrient limited in the Mississippi delta year-round and strongly nutrient limited in the deep GoM during summer. Our examination of primary production and net phytoplankton growth from the model indicates that the biomass losses, mainly due to zooplankton grazing, play an important role in modulating the simulated seasonal biomass patterns of nanophytoplankton and diatoms. Our analysis further shows that the dominant physical process influencing the local rate of change of model phytoplankton is horizontal advection in the northern shelf and vertical mixing in the deep GoM. This study highlights the need for an integrated analysis of biologically and physically driven biomass fluxes to better understand phytoplankton biomass phenologies in the GoM.


2021 ◽  
Vol 18 (14) ◽  
pp. 4281-4303
Author(s):  
Pierre Damien ◽  
Julio Sheinbaum ◽  
Orens Pasqueron de Fommervault ◽  
Julien Jouanno ◽  
Lorena Linacre ◽  
...  

Abstract. Surface chlorophyll concentrations inferred from satellite images suggest a strong influence of the mesoscale activity on biogeochemical variability within the oligotrophic regions of the Gulf of Mexico (GoM). More specifically, long-living anticyclonic Loop Current eddies (LCEs) are shed episodically from the Loop Current and propagate westward. This study addresses the biogeochemical response of the LCEs to seasonal forcing and show their role in driving phytoplankton biomass distribution in the GoM. Using an eddy resolving (1/12∘) interannual regional simulation, it is shown that the LCEs foster a large biomass increase in winter in the upper ocean. It is based on the coupled physical–biogeochemical model NEMO-PISCES (Nucleus for European Modeling of the Ocean and Pelagic Interaction Scheme for Carbon and Ecosystem Studies) that yields a realistic representation of the surface chlorophyll distribution. The primary production in the LCEs is larger than the average rate in the surrounding open waters of the GoM. This behavior cannot be directly identified from surface chlorophyll distribution alone since LCEs are associated with a negative surface chlorophyll anomaly all year long. This anomalous biomass increase in the LCEs is explained by the mixed-layer response to winter convective mixing that reaches deeper and nutrient-richer waters.


2016 ◽  
Vol 13 (15) ◽  
pp. 4359-4377 ◽  
Author(s):  
Zuo Xue ◽  
Ruoying He ◽  
Katja Fennel ◽  
Wei-Jun Cai ◽  
Steven Lohrenz ◽  
...  

Abstract. A three-dimensional coupled physical–biogeochemical model was used to simulate and examine temporal and spatial variability of sea surface pCO2 in the Gulf of Mexico (GoM). The model was driven by realistic atmospheric forcing, open boundary conditions from a data-assimilative global ocean circulation model, and observed freshwater and terrestrial nutrient and carbon input from major rivers. A 7-year model hindcast (2004–2010) was performed and validated against ship measurements. Model results revealed clear seasonality in surface pCO2 and were used to estimate carbon budgets in the Gulf. Based on the average of model simulations, the GoM was a net CO2 sink with a flux of 1.11 ± 0.84  ×  1012 mol C yr−1, which, together with the enormous fluvial inorganic carbon input, was comparable to the inorganic carbon export through the Loop Current. Two model sensitivity experiments were performed: one without biological sources and sinks and the other using river input from the 1904–1910 period as simulated by the Dynamic Land Ecosystem Model (DLEM). It was found that biological uptake was the primary driver making GoM an overall CO2 sink and that the carbon flux in the northern GoM was very susceptible to changes in river forcing. Large uncertainties in model simulations warrant further process-based investigations.


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