Using absorbance peak of carbonate to select suitable regression model before predicting soil inorganic carbon concentration by mid-infrared reflectance spectroscopy

Author(s):  
Cécile Gomez ◽  
Tiphaine Chevallier ◽  
Patricia Moulin ◽  
Bernard G. Barthès

<p><span>Mid-Infrared reflectance spectroscopy (MIRS, 4000 – 400 cm<sup>-1</sup>) is being considered to provide accurate estimations of soil inorganic carbon (SIC) contents. Usually, the prediction performances by MIRS are analyzed using figures of merit based on entire test datasets characterized by large SIC ranges, without paying attention to performances at sub-range scales. This work aims to <em>1)</em> evaluate the performances of MIR regression models for SIC prediction, for a large range of SIC test data (0-100 g/kg) and for several regular sub-ranges of SIC values (0-5, 5-10, 10-15 g/kg, etc.) and <em>2)</em> adapt the prediction model depending on sub-ranges of test samples, using the absorbance peak at 2510 cm<sup>-1</sup> for separating SIC-poor and SIC-rich test samples. This study used a Tunisian MIRS topsoil dataset including 96 soil samples, mostly rich in SIC, to calibrate and validate SIC prediction models; and a French MIRS topsoil dataset including 2178 soil samples, mostly poor in SIC, to test them. Two following regression models were used: a partial least squares regression (PLSR) using the entire spectra and a simple linear regression (SLR) using the height of the carbonate absorbance peak at 2150 cm<sup>-1</sup>.</span></p><p><span>First, our results showed that PLSR provided <em>1) </em>better performances than SLR on the Validation Tunisian dataset (R<sup>2</sup><sub>test</sub> of 0.99 vs. 0.86, respectively), but <em>2) </em>lower performances than SLR on the Test French dataset (R<sup>2</sup><sub>test</sub> of 0.70 vs. 0.91, respectively). Secondly, our results showed that on the Test French dataset, predicted SIC values were more accurate for SIC-poor samples (< 15 g/kg) with SLR (RMSE<sub>test</sub> from 1.5 to 7.1 g/kg, depending on the sub-range) than with PLSR prediction model (RMSE<sub>test </sub>from 7.3 to 14.8 g/kg, depending on the sub-range). Conversely, predicted SIC values were more accurate for carbonated samples (> 15 g/kg) with PLSR (RMSE<sub>test</sub> from 4.4 to 10.1 g/kg, depending on the sub-range) than with SLR prediction model (RMSE<sub>test</sub> from 6.8 to 14 g/kg, depending on the sub-range). Finally, our results showed that the absorbance peak at 2150 cm<sup>-1</sup> could be used before prediction to separate SIC-poor and SIC-rich test samples (452 and 1726 samples, respectevely). The SLR and PLSR regression methods applied to these SIC-poor and SIC-rich test samples, respectively, provided better prediction performances (<em>R²</em><sub><em>test </em></sub>of 0.95 and <em>RMSE</em><sub><em>test</em></sub> of 3.7 g/kg<sup></sup>). </span></p><p><span>Finally, this study demonstrated that the use of the spectral absorbance peak at 2150 cm<sup>-1</sup> provided useful information on Test samples and helped the selection of the optimal prediction model depending on SIC level, when using calibration and test sample sets with very different SIC distributions.</span></p>

2020 ◽  
Author(s):  
Tiphaine Chevallier ◽  
Cécile Gomez ◽  
Patricia Moulin ◽  
Imane Bouferra ◽  
Kaouther Hmaidi ◽  
...  

<p>Mid-Infrared Reflectance Spectroscopy (MIRS, 4000–400 cm<sup>-1</sup>) is being considered to provide accurate estimations of soil properties, including soil organic carbon (SOC) and soil inorganic carbon (SIC) contents. This has mainly been demonstrated when datasets used to build, validate and test the prediction model originate from the same area A, with similar geopedological conditions. The objective of this study was to analyze how MIRS performed when used to predict SOC and SIC contents, from a calibration database collected over a region A, to predict over a region B, where A and B have no common area and different soil and climate conditions. This study used a French MIRS soil dataset including 2178 soil samples to calibrate SIC and SOC prediction models with partial least squares regression (PLSR), and a Tunisian MIRS soil dataset including 96 soil samples to test them. Our results showed that using the French MIRS soil database i) SOC and SIC of French samples were successfully predicted, ii) SIC of Tunisian samples was also predicted successfully, iii) local calibration significantly improved SOC prediction of Tunisian samples and iv) prediction models seemed more robust for SIC than for SOC. So in future, MIRS might replace, or at least be considered as, a conventional physico-chemical analysis technique, especially when as exhaustive as possible calibration database will become available.</p>


2020 ◽  
Vol 193 ◽  
pp. 105078 ◽  
Author(s):  
Andreas Morlok ◽  
Benjamin Schiller ◽  
Iris Weber ◽  
Mohit Melwani Daswani ◽  
Aleksandra N. Stojic ◽  
...  

1994 ◽  
Vol 2 (3) ◽  
pp. 153-162 ◽  
Author(s):  
James B. Reeves

The objective of this work was to explore the relative merits of near and mid-infrared diffuse reflectance spectroscopy in determining the composition of sodium chlorite treated forages and by-products. Sixteen feed-stuffs (174 total samples treated at one of 11 levels of sodium chlorite, 0 to 0.394 g per gram of feedstuff) were examined in the near and mid-infrared spectral regions using diffuse reflectance on a Fourier transform spectrometer, and in the near infrared region using a grating monochromator. Samples were scanned as is and as 5% sample in KBr on the Fourier spectrometer and as is on the grating monochromator. Samples were analysed chemically and spectroscopically for neutral and acid detergent fibre, in vitro digestibility, permanganate lignin, crude protein and lignin nitrobenzene oxidation products. Results showed that diffuse mid-infrared reflectance spectroscopy can perform as well as, and sometimes better than, diffuse near infrared reflectance spectroscopy in determining the composition of chlorite-treated forages and by-products. In addition, Fourier near infrared spectroscopy did not perform as well as either near infrared using a grating monochromator or the Fourier mid-infrared spectrometer. Finally, diluting samples with KBr was often beneficial for mid-infrared based determinations.


2021 ◽  
Vol 37 (5) ◽  
pp. 775-781
Author(s):  
Matthew F. Digman ◽  
Jerry H. Cherney ◽  
Debbie J. Cherney

HIGHLIGHTSQuadratic relationships were established to relate ear moisture or stover moisture to whole plant moisture, and they explained 90% and 84% of whole plant moisture, respectively. Based on our observations, the moisture content of a corn field can be estimated within +1% w.b. in 19 out of 20 fields by sampling 5-10 plants. The calibration offered by SCiO was successful at predicting oven-dried moisture content based on traditional NIRS metrics of R2 = 0.92, RMSE = 3.6, RPD = 3.2, and RER = 15. However, the 95% prediction bands were +6.9% w.b., which would indicate little utility in estimating ear moisture content. Based on a prediction model that was developed using the data collected for this study, a significant instrument-to-instrument bias was observed, indicating the necessity of including multiple SCiO devices in calibration spectra collection. ABSTRACT. Determining the appropriate time to harvest whole-plant corn is an essential factor driving the successful preservation via anaerobic fermentation (ensiling). The current options for timely on-farm monitoring of corn moisture in the field include selecting a set of representative plants, chopping and drying a subsample, or harvesting a portion of the field using a harvester equipped with an on-board moisture sensing system. Both methods are time-consuming and expensive, limiting their practicality for harvest decision-making. This work’s objective was to develop a practical solution that utilizes the moisture content of the ear to estimate whole-plant moisture. An improvement of this method was also considered that utilized a hand-held near-infrared reflectance spectroscopy (NIRS) device to predict ear moisture in situ. Based on the data collected during this work, a quadratic relationship was developed where ear moisture explained 90% of the variability in whole-plant corn moisture. However, based on our observations, the hand-held NIRS evaluated would have little utility in predicting whole-plant corn moisture with either the calibration developed here or provided by the manufacturer. The manufacturer’s prediction model yielded the best result with an R2 of 0.92, and a ratio of performance to deviation of 3.19. However, the 95% prediction band was +6.85% w.b. Finally, we determined that for a corn field uniform in appearance, sampling five to ten plants is likely to provide a reasonable estimate of field moisture. Keywords: Corn silage, Forage analysis, Harvest timing, Moisture content, NIRS.


2020 ◽  
Vol 4 (4) ◽  
pp. 542-551
Author(s):  
Riska Nurul Saputri ◽  
Ichwana Ichwana ◽  
Agus Arip Munawar

Abstrak. Akuisisi spektrum Near Infrared Reflectance Spectroscopy (NIRS) terkait kualitas dan kondisi tanah telah banyak dilakukan dalam berbagai penelitian. Pada penelitian ini menggunakan model prediksi Partileal Least Squares (PLS) dengan metode koreksi spektrum Mean Normalization (MN), Savitzky-Golay Smoothing, dan kombinasi Mean Normalization (MN) dan Savitzky-Golay Smoothing. Sampel tanah yang digunakan berasal dari Kecamatan Baitussalam Kabupaten Aceh Besar karena dianggap sesuai untuk prediksi kadar salinitas, pH dan C-Organik tanah. Hasil dari penelitian menunjukkan adanya korelasi antara prediksi Near Infrared Reflectance Spectroscopy (NIRS) dengan hasil aktual laboratorium setelah dilakukan pembangunan model prediksi Partileal Least Square (PLS) dan dievaluasi dengan parameter statistika; penggunaan pretreatment Mean Normalization (MN) merupakan metode terbaik atau pilihan, dimana dapat meningkatkan keakuratan hasil prediksi kadar salinitas, pH dan C-Organik tanah.Prediction of Salinity, pH and C-Organic Soils Level Using Near  in Baitussalam Regency, Aceh Besar RegencyAbstract. Near Infrared Reflectance Spectroscopy (NIRS) spectrum acquisition related to soil quality and condition has been carried out in various studies. This study used prediction model Partileal Least Squares (PLS) with the spectrum correction methods used are Mean Normalization (MN), Savitzky-Golay Smoothing, and Combination of Mean Normalization (MN) and Savitzky-Golay Smoothing. The soil samples used were from Baitussalam regency, Aceh Besar regency because they were considered suitable for the prediction of salinity, pH and C-Organic soils. The results of this study showed a correlation between the prediction of Near Infrared Reflectance Spectroscopy (NIRS) with the actual results of the laboratory after the construction of the prediction model Partileal Least Square (PLS) and and evaluated with statistical parameters; the use of pretreatment Mean Normalization (MN) is the best or preferred spectrum correction method, which can improve the accuracy of the predicted results of salinity, pH and C-Organic soil.


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