scholarly journals Supplementary material to "AI4Water v1.0: An open source python package for modeling hydrological time series using data-driven methods"

Author(s):  
Ather Abbas ◽  
Laurie Boithias ◽  
Yakov Pachepsky ◽  
Kyunghyun Kim ◽  
Jong Ahn Chun ◽  
...  
2020 ◽  
Vol 146 (7) ◽  
pp. 04020013 ◽  
Author(s):  
Siraj Muhammed Pandhiani ◽  
Parveen Sihag ◽  
Ani Bin Shabri ◽  
Balraj Singh ◽  
Quoc Bao Pham

Author(s):  
Yong Cui ◽  
Jason D Robinson ◽  
Rudel E Rymer ◽  
Jennifer A Minnix ◽  
Paul M Cinciripini

Abstract In smoking cessation clinical trials, timeline followback (TLFB) interviews are widely used to track daily cigarette consumption. However, there are no standard tools for calculating abstinence based on TLFB data. Individual research groups have to develop their own calculation tools, which is not only time- and resource-consuming but might also lead to variability in the data processing and calculation procedures. To address these issues, we developed a novel open-source Python package named abstcal to calculate abstinence using TLFB data. This package provides data verification, duplicate and outlier detection, missing-data imputation, integration of biochemical verification data, and calculation of a variety of definitions of abstinence, including continuous, point-prevalence, and prolonged abstinence. We verified the accuracy of the calculator using data derived from a clinical smoking cessation study. To improve the package’s accessibility, we have made it available as a free web app. The abstcal package is a reliable abstinence calculator with open-source access, providing a shared validated online tool to the addiction research field. We expect that this open-source abstinence calculation tool will improve the rigor and reproducibility of smoking and addiction research by standardizing TLFB-based abstinence calculation.


2021 ◽  
Author(s):  
Li-Pen Wang ◽  
Ting-Yu Dai ◽  
Yun-Ting He ◽  
Ching-Chun Chou ◽  
Christian Onof

<p>Stochastic rainfall modelling is an increasingly popular technique used by the water and weather risk industries. It can be used to synthesise sufficiently long rainfall time series to support hydrological applications (such as sewer system design) or weather-related risk analysis (such as excess rainfall insurance product design). The Bartlett-Lewis (BL) rectangular pulse model is a type of stochastic model that represents rainfall using a Poisson cluster point process. It is calibrated with standard statistical properties of rainfall data (e.g. mean, coefficient of variation, skewness and auto-correlation and so on), but it can well preserve extreme statistics of rainfall at multiple timescales simultaneously. In addition, it is found to be less sensitive to observational data length than the existing rainfall frequency analysis methods based upon, for example, annual maxima time series, so it provides an alternative to rainfall extremes analysis when long rainfall datasets are not available. </p><p>In this work, we would like to introduce an open source Python package for a BL model: pyBL, implemented based upon the state-of-the-art BL model developed in Onof and Wang (2020). In the pyBL package, the BL model is separated into three main modules. These are statistical properties calculation, BL model calibration and model sampling (i.e. simulation) modules. The statistical properties calculation module processes the input rainfall data and calculates its standard statistical properties at given timescales. The BL model calibration module conducts the model fitting based upon the re-derived BL equations given in Onof and Wang (2020). A numerical solver, based upon Dual Annealing optimization and Nelder-Mead local minimization techniques, is implemented to ensure the efficiency as well as to prevent from being drawn to local optima during the solving process. Finally, one can use the sampling module to generate stochastically rainfall time series at a given timescale and for any required data length, based upon a calibrated BL model.</p><p>The design of the pyBL is highly modularized, and the standard CSV data format is used for file exchange between modules. Users could easily incorporate given modules into their existing applications. In addition, a team, consisting of researchers from National Taiwan University and Imperial College London, will consistently implement the new breakthroughs in BL model to the package, so users will have access to the latest developments. The package is now undergoing the final quality check and will be available on Github (https://github.com/NTU-CompHydroMet-Lab/pyBL) in due course. </p>


2019 ◽  
Author(s):  
R. Preste ◽  
R. Clima ◽  
M. Attimonelli

AbstractHmtNote is a Python package to annotate human mitochondrial variants from VCF files.Variants are annotated using a wide range of information, which are grouped into basic, cross-reference, variability and prediction subsets so that users can either select specific annotations of interest or use them altogether.Annotations are performed using data from HmtVar, a recently published database of human mitochondrial variations, which collects information from several online resources as well as offering in-house pathogenicity predictions.HmtNote also allows users to download a local annotation database, that can be used to annotate variants offline, without having to rely on an internet connection.HmtNote is a free and open source package, and can be downloaded and installed from PyPI (https://pypi.org/project/hmtnote) or GitHub (https://github.com/robertopreste/HmtNote).


Computation ◽  
2021 ◽  
Vol 9 (6) ◽  
pp. 72
Author(s):  
Lena Vorspel ◽  
Jens Bücker

DiGriPy is a newly developed Python tool for the simulation of district heating networks published as open-source software in GitHub and offered as a Python package on PyPI. It enables the user to easily build a network model, run large-scale demand time series, and automatically compare different temperature-control conditions. In this paper, implementation details and usage instructions are given. Tests showing the results of different scenarios are presented and interpreted.


PEDIATRICS ◽  
2016 ◽  
Vol 137 (Supplement 3) ◽  
pp. 256A-256A
Author(s):  
Catherine Ross ◽  
Iliana Harrysson ◽  
Lynda Knight ◽  
Veena Goel ◽  
Sarah Poole ◽  
...  

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