scholarly journals Real-time nuclear magnetic resonance spectroscopy in the study of biomolecular kinetics and dynamics

2021 ◽  
Vol 2 (1) ◽  
pp. 291-320
Author(s):  
György Pintér ◽  
Katharina F. Hohmann ◽  
J. Tassilo Grün ◽  
Julia Wirmer-Bartoschek ◽  
Clemens Glaubitz ◽  
...  

Abstract. The review describes the application of nuclear magnetic resonance (NMR) spectroscopy to study kinetics of folding, refolding and aggregation of proteins, RNA and DNA. Time-resolved NMR experiments can be conducted in a reversible or an irreversible manner. In particular, irreversible folding experiments pose large requirements for (i) signal-to-noise due to the time limitations and (ii) synchronising of the refolding steps. Thus, this contribution discusses the application of methods for signal-to-noise increases, including dynamic nuclear polarisation, hyperpolarisation and photo-CIDNP for the study of time-resolved NMR studies. Further, methods are reviewed ranging from pressure and temperature jump, light induction to rapid mixing to induce rapidly non-equilibrium conditions required to initiate folding.

2021 ◽  
Author(s):  
György Pintér ◽  
Katharina F. Hohmann ◽  
J. Tassilo Grün ◽  
Julia Wirmer-Bartoschek ◽  
Clemens Glaubitz ◽  
...  

Abstract. The review describes the application of NMR spectroscopy to study kinetics of folding, refolding and aggregation of proteins, RNA and DNA. Time-resolved NMR experiments can be conducted in a reversible or an irreversible manner. In particular irreversible folding experiments pose large requirements on (i) the signal-to-noise due to the time limitations and (ii) on synchronizing the refolding steps. Thus, this contribution discusses the application of methods for signal-to-noise increases including dynamic nuclear polarization, hyperpolarization and photo-CIDNP for the study of time-resolved NMR studies. Further, methods are reviewed ranging from pressure- and temperature-jump, light induction and rapid mixing to induce rapidly non-equilibrium conditions required to initiate folding.


Polymer ◽  
1987 ◽  
Vol 28 (8) ◽  
pp. 1349-1357 ◽  
Author(s):  
A.Kh. Bulai ◽  
V.N. Klyuchnikov ◽  
Ya.G. Urman ◽  
I.Ya. Slonim ◽  
L.M. Bolotina ◽  
...  

1961 ◽  
Vol 34 (5) ◽  
pp. 1574-1600 ◽  
Author(s):  
W. P. Slichter

Abstract The remarkable property that we associate with rubberlike elasticity, the high degree of elastic deformability, has long been known to arise from molecular motion. In fact, Joule recognized a century ago that the retractive force in stretched rubber stems from thermal motions of molecules rather than from attractive forces between molecules, a conclusion which was all the more remarkable because Joule had no idea of the polymeric nature of rubber. This review tells of the newest technique for studying molecular motion, nuclear magnetic resonance spectroscopy (NMR), and of its application to studies of rubberlike substances. Appropriately, the most important measurements of rubberlike elasticity have been mechanical—creep, stress relaxation, dynamic response. The visco-elastic properties have been studied theoretically and have been measured profusely. They have told us much about the spectra of relaxation processes, which range over many decades of frequency. However, the mechanical experiments occur at the macroscopic level. Conclusions as to behavior at the molecular level depend upon the soundness of models. Plainly it is also valuable to examine motion directly at the molecular level. There are several techniques that accomplish this end. Infrared spectroscopy and dielectric relaxation studies are two kinds of measurement that directly indicate the motion of atoms and molecules. To these techniques is added nuclear magnetic resonance spectroscopy. This method responds to molecular behavior quite differently from other kinds of measurement, and avoids some of the restrictions encountered in these other techniques. For example, the requirement of a permanent electric dipole moment effectively excludes dielectric measurements for the study of pure natural rubber and other hydrocarbons, yet motion in such substances is readily seen by NMR. On the other hand, there are distinct limitations to the use of nuclear resonance, as we shall note. In this paper, we shall review the phenomenon of nuclear magnetic resonance, with emphasis on its use in studies of molecular motion in elastomers. It would be wrong to say that NMR has achieved the importance of the principal physical techniques used to study elastomers. Indeed, the information on elastomers yielded by NMR consists largely of isolated examples. Still, we shall seek to show that the method is powerful and has great potentialities. For a more detailed review of the fundamental physics than is given here, the reader is referred to the excellent paper by Pake. A comprehensive survey of NMR studies of polymers is given by Powles.


MRS Bulletin ◽  
1992 ◽  
Vol 17 (5) ◽  
pp. 45-52 ◽  
Author(s):  
Jonathan F. Stebbins

From the earliest days of extractive metallurgy, materials scientists and geoscientists have shared common ground. Experimental approaches, such as phase equilibrium and structural studies, are often similar, as are the questions asked in attempts to connect microscopic fundamentals to technologically desired or naturally observed bulk properties. The actual materials studied by both groups are often similar or even identical, such as silicate ceramics and glasses, magnetic oxides, and crystals based on the perovskite structure.Nuclear magnetic resonance (NMR) was applied to solid-state physics shortly after the technique was invented in 1946. Even at the start, many of the samples placed in magnets in physics laboratories were large single crystals of naturally occurring minerals such as gypsum (CaSO4 · 2H2O) and fluorite (CaF2), perhaps borrowed from mineralogist colleagues. In the last 10 years, however, applications to both the earth and materials science have rapidly expanded because of improvements in both technological capabilities and basic theory. Only work on inorganic materials will be discussed here, although 13C NMR studies have proved very useful in characterizing the complex, often inseparable mixtures of large organic molecules found in soils, kerogen, and coal. I will not attempt to thoroughly review the broad and fast growing literature in inorganic applications. Instead, I have chosen examples, primarily from our recent studies, to illustrate the scope of what is and will become possible.Several recent books clearly introduced the basic concepts of solid-state NMR, and applications to crystalline and glassy silicates as well as NMR at high temperature have been reviewed recently.


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