scholarly journals Human Distribution in Caucasia in the Coldest and Driest Period of the Last Glacial

2021 ◽  
pp. 84-95
Author(s):  
Alexandre Gavashelishvili ◽  
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Y Chromosome ◽  
Modern Human ◽  
Human Populations ◽  
Last Glacial ◽  
Last Glaciation ◽  
Geological Past ◽  
The Times ◽  
The Last Glacial

Since the period the modern human originated anatomically, genetic diversity was accumulated in the hereditarily transferred DNA (e.g., Y-chromosome and mitochondrial DNA), which makes it possible to estimate the ways of human origination and evolution. The research presented in the article uses the branches of Y-chromosome (or paternal branches) which originated in the period of the Last Glaciation. According to the hypothesis to be researched, the major phenomenon in the geological past which could have caused genetic differences by means of reproductive distancing of human populations (i.e., isolation) was the succession of minimal temperatures over the period of glaciation. The author’s hypothesis was motivated by the fact that the dates of temperature minimums almost coincided with the times of origination of paternal branches presumed by other scholars (Fig. 1). Consequently, it was the distribution of the biomes during these minimums that must have affected creation and dissemination of paternal branches.

scholarly journals Archaic mitochondrial DNA inserts in modern day nuclear genomes

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Robert Bücking ◽  
Murray P Cox ◽  
Georgi Hudjashov ◽  
Lauri Saag ◽  
Herawati Sudoyo ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Nuclear Dna ◽  
Modern Human ◽  
Sub Saharan Africa ◽  
Next Generation Sequencing Data ◽  
Human Populations ◽  
Sequencing Data ◽  
Modern Humans ◽  
High Coverage ◽  
Nuclear Genomes

Abstract Background Traces of interbreeding of Neanderthals and Denisovans with modern humans in the form of archaic DNA have been detected in the genomes of present-day human populations outside sub-Saharan Africa. Up to now, only nuclear archaic DNA has been detected in modern humans; we therefore attempted to identify archaic mitochondrial DNA (mtDNA) residing in modern human nuclear genomes as nuclear inserts of mitochondrial DNA (NUMTs). Results We analysed 221 high-coverage genomes from Oceania and Indonesia using an approach which identifies reads that map both to the nuclear and mitochondrial DNA. We then classified reads according to the source of the mtDNA, and found one NUMT of Denisovan mtDNA origin, present in 15 analysed genomes; analysis of the flanking region suggests that this insertion is more likely to have happened in a Denisovan individual and introgressed into modern humans with the Denisovan nuclear DNA, rather than in a descendant of a Denisovan female and a modern human male. Conclusions Here we present our pipeline for detecting introgressed NUMTs in next generation sequencing data that can be used on genomes sequenced in the future. Further discovery of such archaic NUMTs in modern humans can be used to detect interbreeding between archaic and modern humans and can reveal new insights into the nature of such interbreeding events.

scholarly journals Exploring the phylogeography and population dynamics of the giant deer ( Megaloceros giganteus ) using Late Quaternary mitogenomes

2021 ◽  
Vol 288 (1950) ◽  
Author(s):  
Alba Rey-Iglesia ◽  
Adrian M. Lister ◽  
Paula F. Campos ◽  
Selina Brace ◽  
Valeria Mattiangeli ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Last Glacial Maximum ◽  
Late Pleistocene ◽  
Late Quaternary ◽  
Glacial Maximum ◽  
Climatic Fluctuations ◽  
The Holocene ◽  
Last Glacial ◽  
The Last Glacial Maximum ◽  
The Last Glacial

Late Quaternary climatic fluctuations in the Northern Hemisphere had drastic effects on large mammal species, leading to the extinction of a substantial number of them. The giant deer ( Megaloceros giganteus ) was one of the species that became extinct in the Holocene, around 7660 calendar years before present. In the Late Pleistocene, the species ranged from western Europe to central Asia. However, during the Holocene, its range contracted to eastern Europe and western Siberia, where the last populations of the species occurred. Here, we generated 35 Late Pleistocene and Holocene giant deer mitogenomes to explore the genetics of the demise of this iconic species. Bayesian phylogenetic analyses of the mitogenomes suggested five main clades for the species: three pre-Last Glacial Maximum clades that did not appear in the post-Last Glacial Maximum genetic pool, and two clades that showed continuity into the Holocene. Our study also identified a decrease in genetic diversity starting in Marine Isotope Stage 3 and accelerating during the Last Glacial Maximum. This reduction in genetic diversity during the Last Glacial Maximum, coupled with a major contraction of fossil occurrences, suggests that climate was a major driver in the dynamics of the giant deer.

scholarly journals Archaic mitochondrial DNA inserts in modern day nuclear genomes

2019 ◽  
Author(s):  
Robert Bücking ◽  
Murray P Cox ◽  
Georgi Hudjashov ◽  
Lauri Saag ◽  
Herawati Sudoyo ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Nuclear Dna ◽  
Modern Human ◽  
Next Generation Sequencing Data ◽  
Human Populations ◽  
Sequencing Data ◽  
Modern Humans ◽  
High Coverage ◽  
Nuclear Genomes ◽  
Generation Sequencing

Abstract Background: Traces of interbreeding of Neanderthals and Denisovans with modern humans in the form of archaic DNA have been detected in the genomes of present-day human populations outside sub-Sahara Africa. Up to now, only nuclear archaic DNA has been detected in modern humans; we therefore attempted to identify archaic mitochondrial DNA (mtDNA) residing in modern human nuclear genomes as nuclear inserts of mitochondrial DNA (NUMTs). Results: We analysed 221 high-coverage genomes from Oceania and Indonesia using an approach which identifies reads that map both to the nuclear and mitochondrial DNA. We then classified reads according to the source of the mtDNA, and found one NUMT of Denisovan mtDNA origin; analysis of the flanking region suggests that this insertion is more likely to have happened in a Denisovan individual and introgressed into modern humans with the Denisovan nuclear DNA, rather than in a descendant of a Denisovan female and a modern human male. Conclusions: Here we present our pipeline for detecting introgressed NUMTs in next generation sequencing data that can be used on genomes sequenced in the future. Further discovery of such archaic NUMTs in modern humans can be used to detect interbreeding between archaic and modern humans and can reveal new insights into the nature of such interbreeding events.

scholarly journals Continuous vegetation record of the Greater Cape Floristic Region (South Africa) covering the past 300 thousand years (IODP U1479)

2021 ◽  
Author(s):  
Lydie M. Dupont ◽  
Xueqin Zhao ◽  
Chistopher Charles ◽  
J. Tyler Faith ◽  
David Braun
Keyword(s):  
South Africa ◽  
Vegetation History ◽  
Modern Human ◽  
Cape Floristic Region ◽  
Archaeological Record ◽  
The Past ◽  
Modern Human Origins ◽  
Last Glaciation ◽  
History Of ◽  
The Last Glacial

Abstract. The flora of the Greater Cape Floristic Region (GCFR) of South Africa is a biodiversity hotspot of global significance, and its archaeological record has contributed substantially to the understanding of modern human origins. For both reasons, the climate and vegetation history of south-western South Africa is of interest to numerous fields. Currently known paleo-environmental records cover the Holocene, the last glacial-interglacial transition and parts of the last glaciation but do not encompass a full glacial-interglacial cycle. To obtain a continuous vegetation record of the last Pleistocene glacial-interglacial cycles, we studied pollen, spores and micro-charcoal of deep-sea sediments from IODP Site U1479 retrieved from SW of Cape Town. We compare our palynological results of the Pleistocene with previously published results of Pliocene material from the same site. We find that the vegetation of the GCFR, in particular Fynbos and Afrotemperate forest, respond to precessional forcing of climate. The micro-charcoal record confirms the importance of fires in the Fynbos vegetation. Ericaceae-rich and Asteraceae-rich types of Fynbos could extend on the western part of the Palaeo-Agulhas Plain (PAP), which emerged during periods of low sea-level of the Pleistocene.

scholarly journals Archaic mitochondrial DNA inserts in modern day nuclear genomes

2019 ◽  
Author(s):  
Robert Bücking ◽  
Murray P Cox ◽  
Georgi Hudjashov ◽  
Lauri Saag ◽  
Herawati Sudoyo ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Nuclear Dna ◽  
Modern Human ◽  
Next Generation Sequencing Data ◽  
Human Populations ◽  
Sequencing Data ◽  
Modern Humans ◽  
High Coverage ◽  
Nuclear Genomes ◽  
Generation Sequencing

Abstract Background Traces of interbreeding of Neanderthals and Denisovans with modern humans in the form of archaic DNA have been detected in the genomes of present-day human populations outside sub-Sahara Africa. Up to now, only nuclear archaic DNA has been detected in modern humans; we therefore attempted to identify archaic mitochondrial DNA (mtDNA) residing in modern human nuclear genomes as nuclear inserts of mitochondrial DNA (NUMTs). Results We analysed 221 high-coverage genomes from Oceania and Indonesia using an approach which identifies reads that map both to the nuclear and mitochondrial DNA. We then classified reads according to the source of the mtDNA, and found one NUMT of Denisovan mtDNA origin; analysis of the flanking region suggests that this insertion is more likely to have happened in a Denisovan individual and introgressed into modern humans with the Denisovan nuclear DNA, rather than in a descendant of a Denisovan female and a modern human male. Conclusions Here we present our pipeline for detecting introgressed NUMTs in next generation sequencing data that can be used on genomes sequenced in the future. Further discovery of such archaic NUMTs in modern humans can be used to detect interbreeding between archaic and modern humans and can reveal new insights into the nature of such interbreeding events.

scholarly journals Archaic mitochondrial DNA inserts in modern day nuclear genomes

2019 ◽  
Author(s):  
Robert Bücking ◽  
Murray P Cox ◽  
Georgi Hudjashov ◽  
Lauri Saag ◽  
Herawati Sudoyo ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Nuclear Dna ◽  
Modern Human ◽  
Next Generation Sequencing Data ◽  
Human Populations ◽  
Sequencing Data ◽  
Modern Humans ◽  
High Coverage ◽  
Nuclear Genomes ◽  
Generation Sequencing

Abstract Background: Traces of interbreeding of Neanderthals and Denisovans with modern humans in the form of archaic DNA have been detected in the genomes of present-day human populations outside sub-Sahara Africa. Up to now, only nuclear archaic DNA has been detected in modern humans; we therefore attempted to identify archaic mitochondrial DNA (mtDNA) residing in modern human nuclear genomes as nuclear inserts of mitochondrial DNA (NUMTs). Results: We analysed 221 high-coverage genomes from Oceania and Indonesia using an approach which identifies reads that map both to the nuclear and mitochondrial DNA. We then classified reads according to the source of the mtDNA, and found one NUMT of Denisovan mtDNA origin; analysis of the flanking region suggests that this insertion is more likely to have happened in a Denisovan individual and introgressed into modern humans with the Denisovan nuclear DNA, rather than in a descendant of a Denisovan female and a modern human male. Conclusions: Here we present our pipeline for detecting introgressed NUMTs in next generation sequencing data that can be used on genomes sequenced in the future. Further discovery of such archaic NUMTs in modern humans can be used to detect interbreeding between archaic and modern humans and can reveal new insights into the nature of such interbreeding events.

10Be data from meltwater channels suggest that Jameson Land, east Greenland, was ice-covered during the last glacial maximum

2011 ◽  
Vol 76 (3) ◽  
pp. 452-459 ◽  
Author(s):  
Lena Håkansson ◽  
Jason P. Briner ◽  
Ala Aldahan ◽  
Göran Possnert
Keyword(s):  
Last Glacial Maximum ◽  
Continental Margin ◽  
Glacial Maximum ◽  
Last Glacial ◽  
Last Glaciation ◽  
Exposure Age ◽  
Bedrock Weathering ◽  
The Mean ◽  
The Last Glacial Maximum ◽  
The Last Glacial

AbstractAlong the northeast Greenland continental margin, bedrock on interfjord plateaus is highly weathered, whereas rock surfaces in fjord troughs are characterized by glacial scour. Based on the intense bedrock weathering and lack of glacial deposits from the last glaciation, interfjord plateaus have long been thought to be ice-free throughout the last glacial maximum (LGM). In recent years there is growing evidence from shelf and fjord settings that the northeast Greenland continental margin was more extensively glaciated during the LGM than previously thought. However, little is still known from interfjord settings. We present cosmogenic 10Be data from meltwater channels and weathered sandstone outcrops on Jameson Land, an interfjord highland north of Scoresby Sund. The mean exposure age of samples from channel beds (n = 3) constrains on the onset of deglaciation on interior Jameson Land to 18.5 ± 1.3–21.4 ± 1.9 ka (for erosion conditions of 0–10 mm/ka, respectively). This finding adds to growing evidence that the northeast Greenland continental margin was more heavily glaciated during the LGM than previously thought.

scholarly journals Timing and causes of North African wet phases during the last glacial period and implications for modern human migration

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Dirk L. Hoffmann ◽  
Mike Rogerson ◽  
Christoph Spötl ◽  
Marc Luetscher ◽  
Derek Vance ◽  
...  
Keyword(s):  
Modern Human ◽  
Human Migration ◽  
Glacial Period ◽  
North African ◽  
Last Glacial Period ◽  
Last Glacial ◽  
The Last Glacial
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