Estimation of Holocene bedload sedimentation rate in a paleo-drowned river-valley (Middle Harbour, Sydney estuary, Australia)

Middle Harbour is a drowned-river valley located adjacent to the larger Sydney estuary, Australia. Extensive, high-resolution seismic data were correlated with borehole, land use, topographical, and geological data to calculate the mass of genetically different sediment deposits in Middle Harbour. The Harbour follows a well-defined drowned river-valley structure featuring small fluvial bedload delta deposits in the upper reaches of the embayments, a deep, central extensive mud basin overlying transgressive basal accumulations and a large flood-tide delta at the entrance. Deposits of an estimated 5,094 t of bedload, 21,143 t of suspended sediment and 5,947 t of transgressive basal material located in the estuary provided sedimentation rates of 0.68 t y-1, 1.29 t y-1, and 2.86 t y -1 respectively. These rates, determined from measured accumulations, were surprisingly low and substantially smaller than modelled rates. However, low sedimentation rates for suspended material may be due to fine sediment escaping over the top of the marine tidal delta, which effectively traps all bedload material from exiting the Harbour. Results of this study indicate that Holocene bedload sedimentation in Middle Harbour was slow and regular until a rapid increase after urbanisation commenced in the catchment. Most pre-Holocene material was eroded from Middle Harbour during the Last Glacial period with sediment currently present in the estuary having been deposited since sea-level recovery.

Model evolution of the middle atmospheric palaeoenvironments

Ice core air analysis has indicated a significant variation in the atmospheric contents of the greenhouse gases CO2, CH4 and N2O from the last ice age to the present period. This may have contributed in altering the vertical distribution of temperature and composition of the atmosphere about which not much information is available. The two dimensional interactive model of radiation, dynamics and chemistry has been used to reconstruct the annual vertical distribution of thermal structure and trace gas concentrations of the middle atmosphere for the periods extending from last ice age to the present. For this purpose, ice core air data of the above mentioned forcing parameters are used as input to the model for different time frames including Mounder Maximum, Roman maximum, pre-industrial period and the last glacial period. Model results show that the considerable reduction in the greenhouse gas content for the last ice age has resulted in colling of troposphere and a warming by about 10 to 15° K in the upper stratosphere as compared to present. The variation in temperature is closely related with the water vapour content. The percentage change in ozone concentration for the last glacial period is to a miximum of 50% near the poles in the upper stratosphere and about 10% in the tropics. A significant decrease in the hydroxyl content in the last ice age must have contributed in increasing the ozone content above 30 km. however, the total integrated ozone content appears to show marginal variations from last ice age to the present due to several counter-balancing effects.

Distinctive mitogenomic lineages within populations of White-tailed Eagles

Using whole mitochondrial DNA sequences from 89 White-tailed Eagles (Haliaeetus albicilla) sampled from Iceland, Greenland, Norway, Denmark and Estonia between 1990 and 2018, we investigate the mitogenomic variation within and between countries. We show that there is a substantial population differentiation between the countries, reflecting similar major phylogeographic patterns obtained previously for the control region of the mitochondria, which suggested two main refugia during the last glacial period. Distinct mitogenomic lineages are observed within countries with divergence times exceeding the end of the last glacial period of the Ice Age. Deviations from neutrality indicate that these lineages have been maintained by natural selection and there is an excess of segregating amino acids in comparison with number of fixations suggesting a large load of deleterious mutations. The maintenance of the distinct mitogenic lineages within countries inflates our estimates of divergence times.

Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature

Sour or wild jujube fruits and dried seeds are popular food all over the world. In this study, we reported a high-quality genome assembly of sour jujube (Ziziphus jujuba Mill. var. spinosa), with a size of 406 Mbp and scaffold N50 of 30.3 Mbp, which experienced only γ hexaploidization event, without recent genome duplication. Population structure analysis identified four jujube subgroups (two domesticated ones, i.e., D1 in West China and D2 in East/SouthEast China, semi-wild, and wild), which underwent an evolutionary history of a significant decline of effective population size during the Last Glacial Period. The respective selection signatures of three subgroups were discovered, such as strong peaks on chromosomes #3 in D1, #1 in D2, and #4 in wild. Genes under the most significant selection on chromosomes #4 in wild were confirmed to be involved in fruit variations among jujube accessions, in transcriptomic analysis. Our study offered novel insights into the jujube population structure and domestication and provided valuable genomic resources for jujube improvement in stress response and fruit flavor in the future.

Onset and termination of Heinrich Stadial 4 and the underlying climate dynamics

Heinrich Stadial 4 during the last glacial period was marked by severe cooling at northern high latitudes along with the attendant changes in Asian Monsoon (Chinese Stadial 4) and South American Monsoon (South American Stadial 4). Here we present improved constraints on timings of Heinrich/Chinese/South American Stadial 4 onset and termination at sub-centennial precision based on speleothem records. We show that their initial onsets were essentially synchronous (40.20 ± 0.08 thousand years ago) and led the Antarctic warming by ~300 years. The Heinrich/Chinese Stadial 4 termination commenced at 38.34 ± 0.07 thousand years ago following a centennial-scale reduction in the Amazon River runoff and a poleward shift of the Southern Westerly wind belt. These two precursor events may have contributed to a reduced Amazon Plume Region and an enhanced Agulhas salt/heat leakage that led to an abrupt resumption of the Atlantic Meridional Ocean Circulation eventually triggering the Heinrich/Chinese Stadial 4 termination.