scholarly journals Peer Review #2 of "Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4 (v0.2)"

2018 ◽  
Vol 200 (15) ◽  
Author(s):  
Blake Ushijima ◽  
Claudia C. Häse

ABSTRACTChemotaxis, the directed movement toward or away from a chemical signal, can be essential to bacterial pathogens for locating hosts or avoiding hostile environments. The coral pathogenVibrio coralliilyticuschemotaxes toward coral mucus; however, chemotaxis has not been experimentally demonstrated to be important for virulence. To further examine this, in-frame mutations were constructed in genes predicted to be important forV. coralliilyticuschemotaxis. MostVibriogenomes contain multiple homologs of various chemotaxis-related genes, and two paralogs of each forcheB,cheR, andcheAwere identified. Based on single mutant analyses, the paralogscheB2,cheR2, andcheA1were essential for chemotaxis in laboratory assays. As predicted, the ΔcheA1and ΔcheR2strains had a smooth-swimming pattern, while the ΔcheB2strain displayed a zigzag pattern when observed under light microscopy. However, these mutants, unlike the parent strain, were unable to chemotax toward the known attractants coral mucus, dimethylsulfoniopropionate, andN-acetyl-d-glucosamine. The ΔcheB2strain and an aflagellate ΔfliG1strain were avirulent to coral, while the ΔcheA1and ΔcheR2strains were hypervirulent (90 to 100% infection within 14 h on average) compared to the wild-type strain (66% infection within 36 h on average). Additionally, the ΔcheA1and ΔcheR2strains appeared to better colonize coral fragments than the wild-type strain. These results suggest that although chemotaxis may be involved with infection (the ΔcheB2strain was avirulent), a smooth-swimming phenotype is important for bacterial colonization and infection. This study provides valuable insight into understandingV. coralliilyticuspathogenesis and how this pathogen may be transmitted between hosts.IMPORTANCECorals are responsible for creating the immense structures that are essential to reef ecosystems; unfortunately, pathogens like the bacteriumVibrio coralliilyticuscan cause fatal infections of reef-building coral species. However, compared to related human pathogens, the mechanisms by whichV. coralliilyticusinitiates infections and locates new coral hosts are poorly understood. This study investigated the effects of chemotaxis, the directional swimming in response to chemical signals, and bacterial swimming patterns on infection of the coralMontipora capitata. Infection experiments with different mutant strains suggested that a smooth-swimming pattern resulted in hypervirulence. These results demonstrate that the role of chemotaxis in coral infection may not be as straightforward as previously hypothesized and provide valuable insight intoV. coralliilyticuspathogenesis.


2001 ◽  
Vol 47 (2) ◽  
pp. 130-138 ◽  
Author(s):  
Pierre Andreoletti ◽  
Bruno Franzetti ◽  
Laurent Nussaume ◽  
Jean-Pierre Andrieu ◽  
Jean Gagnon ◽  
...  

2020 ◽  
Vol 125 (1) ◽  
pp. 115-133 ◽  
Author(s):  
Maciej J. Mrowinski ◽  
Agata Fronczak ◽  
Piotr Fronczak ◽  
Olgica Nedic ◽  
Aleksandar Dekanski

Abstract In this paper, we provide insight into the editorial process as seen from the perspective of journal editors. We study a dataset obtained from the Journal of the Serbian Chemical Society, which contains information about submitted and rejected manuscripts, in order to find differences between local (Serbian) and external (non-Serbian) submissions. We show that external submissions (mainly from India, Iran and China) constitute the majority of all submissions, while local submissions are in the minority. Most of submissions are rejected for technical reasons (e.g. wrong manuscript formatting or problems with images) and many users resubmit the same paper without making necessary corrections. Manuscripts with just one author are less likely to pass the technical check, which can be attributed to missing metadata. Articles from local authors are better prepared and require fewer resubmissions on average before they are accepted for peer review. The peer review process for local submissions takes less time than for external papers and local submissions are more likely to be accepted for publication. Also, while there are more men than women among external users, this trend is reversed for local users. In the combined group of local and external users, articles submitted by women are more likely to be published than articles submitted by men.


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