scholarly journals Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed atomic force microscopy

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Kien Xuan Ngo ◽  
Noriyuki Kodera ◽  
Eisaku Katayama ◽  
Toshio Ando ◽  
Taro QP Uyeda

High-speed atomic force microscopy was employed to observe structural changes in actin filaments induced by cofilin binding. Consistent with previous electron and fluorescence microscopic studies, cofilin formed clusters along actin filaments, where the filaments were 2-nm thicker and the helical pitch was ∼25% shorter, compared to control filaments. Interestingly, the shortened helical pitch was propagated to the neighboring bare zone on the pointed-end side of the cluster, while the pitch on the barbed-end side was similar to the control. Thus, cofilin clusters induce distinctively asymmetric conformational changes in filaments. Consistent with the idea that cofilin favors actin structures with a shorter helical pitch, cofilin clusters grew unidirectionally toward the pointed-end of the filament. Severing was often observed near the boundaries between bare zones and clusters, but not necessarily at the boundaries.

2020 ◽  
Vol 295 (34) ◽  
pp. 11995-12001
Author(s):  
Yangang Pan ◽  
Luda S. Shlyakhtenko ◽  
Yuri L. Lyubchenko

Vif (viral infectivity factor) is a protein that is essential for the replication of the HIV-1 virus. The key function of Vif is to disrupt the antiviral activity of host APOBEC3 (apolipoprotein B mRNA-editing enzyme catalytic subunit 3) proteins, which mutate viral nucleic acids. Inside the cell, Vif binds to the host cell proteins Elongin-C, Elongin-B, and core-binding factor subunit β, forming a four-protein complex called VCBC. The structure of VCBC–Cullin5 has recently been solved by X-ray crystallography, and, using molecular dynamics simulations, the dynamics of VCBC have been characterized. Here, we applied time-lapse high-speed atomic force microscopy to visualize the conformational changes of the VCBC complex. We determined the three most favorable conformations of this complex, which we identified as the triangle, dumbbell, and globular structures. Moreover, we characterized the dynamics of each of these structures. Our data revealed the very dynamic behavior of all of them, with the triangle and dumbbell structures being the most dynamic. These findings provide insight into the structure and dynamics of the VCBC complex and may support efforts to improve HIV treatment, because Vif is essential for virus survival in the cell.


2017 ◽  
Vol 112 (3) ◽  
pp. 422a
Author(s):  
Martina Rangl ◽  
Atsushi Miyagi ◽  
Julia Kowal ◽  
Henning Stahlberg ◽  
Crina M. Nimigean ◽  
...  

2011 ◽  
Vol 123 (19) ◽  
pp. 4502-4505 ◽  
Author(s):  
Mikihiro Shibata ◽  
Takayuki Uchihashi ◽  
Hayato Yamashita ◽  
Hideki Kandori ◽  
Toshio Ando

2011 ◽  
Vol 50 (19) ◽  
pp. 4410-4413 ◽  
Author(s):  
Mikihiro Shibata ◽  
Takayuki Uchihashi ◽  
Hayato Yamashita ◽  
Hideki Kandori ◽  
Toshio Ando

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