scholarly journals Standardized and reproducible measurement of decision-making in mice

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
◽  
Valeria Aguillon-Rodriguez ◽  
Dora Angelaki ◽  
Hannah Bayer ◽  
Niccolo Bonacchi ◽  
...  

Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements of mouse behavior. Here, we show that a standardized task to probe decision-making in mice produces reproducible results across multiple laboratories. We adopted a task for head-fixed mice that assays perceptual and value-based decision making, and we standardized training protocol and experimental hardware, software, and procedures. We trained 140 mice across seven laboratories in three countries, and we collected 5 million mouse choices into a publicly available database. Learning speed was variable across mice and laboratories, but once training was complete there were no significant differences in behavior across laboratories. Mice in different laboratories adopted similar reliance on visual stimuli, on past successes and failures, and on estimates of stimulus prior probability to guide their choices. These results reveal that a complex mouse behavior can be reproduced across multiple laboratories. They establish a standard for reproducible rodent behavior, and provide an unprecedented dataset and open-access tools to study decision-making in mice. More generally, they indicate a path toward achieving reproducibility in neuroscience through collaborative open-science approaches.

Author(s):  
◽  
Valeria Aguillon-Rodriguez ◽  
Dora E. Angelaki ◽  
Hannah M. Bayer ◽  
Niccolò Bonacchi ◽  
...  

Progress in science requires standardized assays whose results can be readily shared, compared, and reproduced across laboratories. Reproducibility, however, has been a concern in neuroscience, particularly for measurements of mouse behavior. Here we show that a standardized task to probe decision-making in mice produces reproducible results across multiple laboratories. We designed a task for head-fixed mice that combines established assays of perceptual and value-based decision making, and we standardized training protocol and experimental hardware, software, and procedures. We trained 140 mice across seven laboratories in three countries, and we collected 5 million mouse choices into a publicly available database. Learning speed was variable across mice and laboratories, but once training was complete there were no significant differences in behavior across laboratories. Mice in different laboratories adopted similar reliance on visual stimuli, on past successes and failures, and on estimates of stimulus prior probability to guide their choices. These results reveal that a complex mouse behavior can be successfully reproduced across multiple laboratories. They establish a standard for reproducible rodent behavior, and provide an unprecedented dataset and open-access tools to study decision-making in mice. More generally, they indicate a path towards achieving reproducibility in neuroscience through collaborative open-science approaches.


F1000Research ◽  
2016 ◽  
Vol 5 ◽  
pp. 692 ◽  
Author(s):  
Bianca Kramer ◽  
Jeroen Bosman

Many new websites and online tools have come into existence to support scholarly communication in all phases of the research workflow. To what extent researchers are using these and more traditional tools has been largely unknown. This 2015-2016 survey aimed to fill that gap. Its results may help decision making by stakeholders supporting researchers and may also help researchers wishing to reflect on their own online workflows. In addition, information on tools usage can inform studies of changing research workflows.The online survey employed an open, non-probability sample. A largely self-selected group of 20663 researchers, librarians, editors, publishers and other groups involved in research took the survey, which was available in seven languages. The survey was open from May 10, 2015 to February 10, 2016. It captured information on tool usage for 17 research activities, stance towards open access and open science, and expectations of the most important development in scholarly communication. Respondents’ demographics included research roles, country of affiliation, research discipline and year of first publication.


2020 ◽  
Author(s):  
Matheus Pereira Lobo

A huge collaborative open science model is proposed. Many authors collaborating in a paper leads to a substantial reduction for the Article Processing Charges (APCs) in the Open Access Journals. This can significantly stimulate research within a healthier citizen and open science culture.


ABI-Technik ◽  
2021 ◽  
Vol 41 (1) ◽  
pp. 41-47
Author(s):  
Maike Neufend ◽  
Maxi Kindling
Keyword(s):  

Science ◽  
2020 ◽  
Vol 368 (6491) ◽  
pp. 574-577 ◽  
Author(s):  
Claudio Aspesi ◽  
Amy Brand
Keyword(s):  

2021 ◽  
Vol 13 (14) ◽  
pp. 7903
Author(s):  
Young-Hoon Bae ◽  
Jong-Yeong Son ◽  
Ryun-Seok Oh ◽  
Hye-Kyoung Lee ◽  
Yoon-Ha Lee ◽  
...  

This study analyzed the decision-making times (DMTs) of participants at T-type indoor intersections according to the horizontal/vertical installation locations and the arrow directions of escape route signs. A total of 120 university students participated in the study. We analyzed the DMTs and following rates (FRs) required for the participants to observe the visual stimuli of the signs installed in front of the T-type indoor intersections and then properly select a path according to the arrow direction of the signs. The results are as follows: (1) the participants exhibited shorter DMTs for the right arrow direction of the signs, (2) the Simon effect occurred when the horizontal installation location of the signs was more than 60 cm away from the center of the T-type indoor intersection on both sides, (3) the DMTs of participants increased when the vertical installation location of the signs was low. Finally, we proposed an optimal installation location of the signs to support the shortest DMTs at T-type indoor intersections. It is expected that the results of this study will provide a database of DMTs, based on the locations of the signs during emergency evacuations, and will be utilized to improve the installation guidelines and regulations of signs.


2018 ◽  
Vol 37 (24) ◽  
Author(s):  
Bernd Pulverer
Keyword(s):  

Author(s):  
Angélica Conceição Dias Miranda ◽  
Milton Shintaku ◽  
Simone Machado Firme

Resumo: Os repositórios têm se tornado comum nas universidades e institutos de pesquisa, como forma de ofertar acesso à produção científica e, com isso, dar visibilidade à instituição. Entretanto, em muitos casos ainda estão restritos aos conceitos do movimento do arquivo aberto e acesso aberto, sendo que já se discute o Movimento da Ciência Aberta, revelando certo descompasso, requerendo estudos que apoiem a atualização dessa importante ferramenta. Nesse sentido, o presente estudo verifica os requisitos envolvidos nos movimentos abertos, de forma a apoiar a discussão técnica e tecnológica. Um estudo bibliográfico, que transforma as informações sobre os movimentos em critérios para avaliação de ferramentas para criação de repositórios, apresentando a implementação da interação como um novo desafio. Nas considerações procura-se contribuir com a discussão sobre a Ciência Aberta, de forma mais aplicada bem como o ajuste dos repositórios a esse movimento.Palavras-chave: Repositórios.  Critérios de avaliação. Arquivo aberto. Acesso aberto. Dados abertos. Ciência aberta.SURVEY OF CRITERIA FOR EVALUATION OF REPOSITORY TOOLS ACCORDING TO OPEN SCIENCE Abstract: Repositories have become common in universities and research institutes, as a way of offering access to scientific production, thereby giving visibility to the institution. Meanwhile, in many cases, repositories are restricted to the concepts of open movement and open access considering that the Open Science Movement is already being discussed. Regarding this matter, this study verifies the requirements involved in the open movements, in order to support a technical and technological discussion.  A bibliographic study that transforms information about movements into criteria to evaluate tools used to create repositories, presenting an implementation of interaction as a new challenge. In the considerations, we contribute with a discussion about an Open Science, in a more applied way, as well as the adjustment of the repositories to this movement.Keywords: Repositories. Evaluation Criteria. Open File. Open Access. Open Data. Open Science.


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