scholarly journals Does size really matter?

eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
David G Heckel

Analysis of the smallest known arthropod genome reveals a mechanism for genome reduction that appears to be driven by a specialized ecological interaction with plants.

Author(s):  
Tiago Nardi ◽  
Emanuela Olivieri ◽  
Edward Kariuki ◽  
Davide Sassera ◽  
Michele Castelli

Abstract Ticks require bacterial symbionts for the provision of necessary compounds that are absent in their hematophagous diet. Such symbionts are frequently vertically transmitted and, most commonly, belong to the Coxiella genus, which also includes the human pathogen Coxiella burnetii. This genus can be divided in four main clades, presenting partial but incomplete co-cladogenesis with the tick hosts. Here we report the genome sequence of a novel Coxiella, endosymbiont of the African tick Amblyomma nuttalli, and the ensuing comparative analyses. Its size (~1 Mb) is intermediate between symbionts of Rhipicephalus species and other Amblyomma species. Phylogenetic analyses show that the novel sequence is the first genome of the B clade, the only one for which no genomes were previously available. Accordingly, it allows to draw an enhanced scenario of the evolution of the genus, one of parallel genome reduction of different endosymbiont lineages, which are now at different stages of reduction from a more versatile ancestor. Gene content comparison allows to infer that the ancestor could be reminiscent of Coxiella burnetii. Interestingly, the convergent loss of mismatch repair could have been a major driver of such reductive evolution. Predicted metabolic profiles are rather homogenous among Coxiella endosymbionts, in particular vitamin biosynthesis, consistently with a host-supportive role. Concurrently, similarities among Coxiella endosymbionts according to host genus and despite phylogenetic unrelatedness hint at possible host-dependent effects.


2021 ◽  
Author(s):  
Xiaoyuan Feng ◽  
Xiao Chu ◽  
Yang Qian ◽  
Michael W. Henson ◽  
V. Celeste Lanclos ◽  
...  
Keyword(s):  

Marine Drugs ◽  
2021 ◽  
Vol 19 (6) ◽  
pp. 298
Author(s):  
Despoina Konstantinou ◽  
Rafael V. Popin ◽  
David P. Fewer ◽  
Kaarina Sivonen ◽  
Spyros Gkelis

Sponges form symbiotic relationships with diverse and abundant microbial communities. Cyanobacteria are among the most important members of the microbial communities that are associated with sponges. Here, we performed a genus-wide comparative genomic analysis of the newly described marine benthic cyanobacterial genus Leptothoe (Synechococcales). We obtained draft genomes from Le. kymatousa TAU-MAC 1615 and Le. spongobia TAU-MAC 1115, isolated from marine sponges. We identified five additional Leptothoe genomes, host-associated or free-living, using a phylogenomic approach, and the comparison of all genomes showed that the sponge-associated strains display features of a symbiotic lifestyle. Le. kymatousa and Le. spongobia have undergone genome reduction; they harbored considerably fewer genes encoding for (i) cofactors, vitamins, prosthetic groups, pigments, proteins, and amino acid biosynthesis; (ii) DNA repair; (iii) antioxidant enzymes; and (iv) biosynthesis of capsular and extracellular polysaccharides. They have also lost several genes related to chemotaxis and motility. Eukaryotic-like proteins, such as ankyrin repeats, playing important roles in sponge-symbiont interactions, were identified in sponge-associated Leptothoe genomes. The sponge-associated Leptothoe stains harbored biosynthetic gene clusters encoding novel natural products despite genome reduction. Comparisons of the biosynthetic capacities of Leptothoe with chemically rich cyanobacteria revealed that Leptothoe is another promising marine cyanobacterium for the biosynthesis of novel natural products.


2017 ◽  
Vol 11 (10) ◽  
pp. 2258-2266 ◽  
Author(s):  
Michael Baumgartner ◽  
Stefan Roffler ◽  
Thomas Wicker ◽  
Jakob Pernthaler

2006 ◽  
Vol 103 (39) ◽  
pp. 14560-14565 ◽  
Author(s):  
D. M. Bulach ◽  
R. L. Zuerner ◽  
P. Wilson ◽  
T. Seemann ◽  
A. McGrath ◽  
...  

2018 ◽  
Vol 11 (1) ◽  
pp. 263-269 ◽  
Author(s):  
Thomas A Whelan ◽  
Nicole T Lee ◽  
Renny C H Lee ◽  
Naomi M Fast
Keyword(s):  

2005 ◽  
Vol 15 (6) ◽  
pp. 601-608 ◽  
Author(s):  
Patrick J Keeling ◽  
Claudio H Slamovits

Oikos ◽  
2014 ◽  
Vol 124 (3) ◽  
pp. 243-251 ◽  
Author(s):  
Timothée Poisot ◽  
Daniel B. Stouffer ◽  
Dominique Gravel

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