Diameters of Cocircuit Graphs of Oriented Matroids: An Update

Oriented matroids are combinatorial structures that generalize point configurations, vector configurations, hyperplane arrangements, polyhedra, linear programs, and directed graphs. Oriented matroids have played a key role in combinatorics, computational geometry, and optimization. This paper surveys prior work and presents an update on the search for bounds on the diameter of the cocircuit graph of an oriented matroid. The motivation for our investigations is the complexity of the simplex method and the criss-cross method. We review the diameter problem and show the diameter bounds of general oriented matroids reduce to those of uniform oriented matroids. We give the latest exact bounds for oriented matroids of low rank and low corank, and for all oriented matroids with up to nine elements (this part required a large computer-based proof). For arbitrary oriented matroids, we present an improvement to a quadratic bound of Finschi. Our discussion highlights an old conjecture that states a linear bound for the diameter is possible. On the positive side, we show the conjecture is true for oriented matroids of low rank and low corank, and, verified with computers, for all oriented matroids with up to nine elements. On the negative side, our computer search showed two natural strengthenings of the main conjecture are false.

Cell complexes, poset topology and the representation theory of algebras arising in algebraic combinatorics and discrete geometry

In recent years it has been noted that a number of combinatorial structures such as real and complex hyperplane arrangements, interval greedoids, matroids and oriented matroids have the structure of a finite monoid called a left regular band. Random walks on the monoid model a number of interesting Markov chains such as the Tsetlin library and riffle shuffle. The representation theory of left regular bands then comes into play and has had a major influence on both the combinatorics and the probability theory associated to such structures. In a recent paper, the authors established a close connection between algebraic and combinatorial invariants of a left regular band by showing that certain homological invariants of the algebra of a left regular band coincide with the cohomology of order complexes of posets naturally associated to the left regular band. The purpose of the present monograph is to further develop and deepen the connection between left regular bands and poset topology. This allows us to compute finite projective resolutions of all simple modules of unital left regular band algebras over fields and much more. In the process, we are led to define the class of CW left regular bands as the class of left regular bands whose associated posets are the face posets of regular CW complexes. Most of the examples that have arisen in the literature belong to this class. A new and important class of examples is a left regular band structure on the face poset of a CAT(0) cube complex. Also, the recently introduced notion of a COM (complex of oriented matroids or conditional oriented matroid) fits nicely into our setting and includes CAT(0) cube complexes and certain more general CAT(0) zonotopal complexes. A fairly complete picture of the representation theory for CW left regular bands is obtained.

Local finiteness of the twisted Bruhat orders on affine Weyl groups

In this paper, we investigate various properties of strong and weak twisted Bruhat orders on a Coxeter group. In particular, we prove that any twisted strong Bruhat order on an affine Weyl group is locally finite, strengthening a result of Dyer [Quotients of twisted Bruhat orders, J. Algebra163 (1994), 3, 861–879]. We also show that, for a non-finite and non-cofinite biclosed set 𝐵 in the positive system of an affine root system with rank greater than 2, the set of elements having a fixed 𝐵-twisted length is infinite. This implies that the twisted strong and weak Bruhat orders have an infinite antichain in those cases. Finally, we show that twisted weak Bruhat order can be applied to the study of the tope poset of an infinite oriented matroid arising from an affine root system.

Computing irreversible minimal cut sets in genome-scale metabolic networks via flux cone projection

Motivation Minimal cut sets (MCSs) for metabolic networks are sets of reactions which, if they are removed from the network, prevent a target reaction from carrying flux. To compute MCSs different methods exist, which may fail to find sufficiently many MCSs for larger genome-scale networks. Results Here we introduce irreversible minimal cut sets (iMCSs). These are MCSs that consist of irreversible reactions only. The advantage of iMCSs is that they can be computed by projecting the flux cone of the metabolic network on the set of irreversible reactions, which usually leads to a smaller cone. Using oriented matroid theory, we show how the projected cone can be computed efficiently and how this can be applied to find iMCSs even in large genome-scale networks. Availability and implementation Software is freely available at https://sourceforge.net/projects/irreversibleminimalcutsets/. Supplementary information Supplementary data are available at Bioinformatics online.

Face monoid actions and tropical hyperplane arrangements

We study the combinatorics of tropical hyperplane arrangements, and their relationship to (classical) hyperplane face monoids. We show that the refinement operation on the faces of a tropical hyperplane arrangement, introduced by Ardila and Develin in their definition of a tropical oriented matroid, induces an action of the hyperplane face monoid of the classical braid arrangement on the arrangement, and hence on a number of interesting related structures. Along the way, we introduce a new characterization of the types (in the sense of Develin and Sturmfels) of points with respect to a tropical hyperplane arrangement, in terms of partial bijections which attain permanents of submatrices of a matrix which naturally encodes the arrangement.